View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19563_low_24 (Length: 362)

Name: NF19563_low_24
Description: NF19563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19563_low_24
NF19563_low_24
[»] chr4 (8 HSPs)
chr4 (17-343)||(1173288-1173607)
chr4 (194-285)||(1167832-1167927)
chr4 (194-285)||(1170314-1170412)
chr4 (50-98)||(32397404-32397452)
chr4 (50-98)||(32882220-32882268)
chr4 (55-96)||(38052427-38052468)
chr4 (51-87)||(9012484-9012520)
chr4 (50-98)||(19806961-19807009)
[»] chr1 (4 HSPs)
chr1 (50-99)||(29086588-29086637)
chr1 (50-96)||(31023726-31023772)
chr1 (55-92)||(11030142-11030179)
chr1 (59-96)||(13352559-13352596)
[»] chr2 (3 HSPs)
chr2 (52-99)||(43248522-43248569)
chr2 (50-96)||(10197955-10198001)
chr2 (50-96)||(21134543-21134589)
[»] chr7 (3 HSPs)
chr7 (50-96)||(42521430-42521476)
chr7 (55-96)||(30440532-30440573)
chr7 (64-96)||(24166749-24166781)
[»] chr5 (5 HSPs)
chr5 (50-96)||(8050487-8050533)
chr5 (50-96)||(36302831-36302877)
chr5 (50-98)||(6517544-6517592)
chr5 (63-99)||(9227857-9227893)
chr5 (50-98)||(37337124-37337172)
[»] chr8 (4 HSPs)
chr8 (59-96)||(3598778-3598815)
chr8 (64-96)||(1513460-1513492)
chr8 (50-98)||(24524035-24524083)
chr8 (50-98)||(36652533-36652581)
[»] chr6 (1 HSPs)
chr6 (51-99)||(25149447-25149493)


Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 343
Target Start/End: Complemental strand, 1173607 - 1173288
Alignment:
Q  17 tacaatacctatacatcattaatannnnnnnnactatcataccctttactatttattattctatcttctttcaattcttttaagaaaaatgctatataca 116  Q
    ||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||    
T  1173607 tacaatacctatacatcattaatattttttttactatcataccctttactatttattattctatcttcttttaatt-ttttaagaaaaatactatataca 1173509  T
Q  117 acgaattgattctcgcaggtacatactgaaagagtattccactgggcannnnnnngatttccatc-----atagaccttccattgaattccgctcaatct 211  Q
    || |||||||||| ||  |||||||| |||||||||||||||||||||       ||||||||||     ||||||||||||||||||||||||||||||    
T  1173508 acaaattgattcttgcgagtacataccgaaagagtattccactgggcatttttttgatttccatctattcatagaccttccattgaattccgctcaatct 1173409  T
Q  212 tcatttataattgattgctttattttttgggatgttttcgggatgcatttttcgctggatatatcactcctcttcttttaatattccctttctatgttat 311  Q
    ||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1173408 tcatttataattgattgctttattttttgggatg-----------catttttcgctggatatatcactcatcttcttttaatattccctttctatgttat 1173320  T
Q  312 taatgagagataaatttgtaaaactacttata 343  Q
    ||||||||||||||||||||||||||||||||    
T  1173319 taatgagagataaatttgtaaaactacttata 1173288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 194 - 285
Target Start/End: Complemental strand, 1167927 - 1167832
Alignment:
Q  194 ttgaattccgctcaatcttcatttata---attgattgctttattttttgggatgttttcgggatgca-tttttcgctggatatatcactcctctt 285  Q
    |||||||||||||||||||||||||||   ||||||||| |||||||| |||||||||||  |||||| ||||| |||||||||||||||||||||    
T  1167927 ttgaattccgctcaatcttcatttataattattgattgcgttatttttcgggatgttttcatgatgcatttttttgctggatatatcactcctctt 1167832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 194 - 285
Target Start/End: Complemental strand, 1170412 - 1170314
Alignment:
Q  194 ttgaattccgctcaatcttcatttataatt------gattgctttattttttgggatgttttcgggatgcat-ttttcgctggatatatcactcctctt 285  Q
    ||||||||||||||||||||||||||||||      |||||| |||||||| |||||||||||  ||||||| |||| |||||||||||||||||||||    
T  1170412 ttgaattccgctcaatcttcatttataattattattgattgcgttatttttcgggatgttttcatgatgcatttttttgctggatatatcactcctctt 1170314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 32397452 - 32397404
Alignment:
Q  50 ctatcataccctttactatttattattctatcttctttcaattctttta 98  Q
    |||| ||| |||| ||||||||||| |||||||||||||||||||||||    
T  32397452 ctattataaccttaactatttattactctatcttctttcaattctttta 32397404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 32882220 - 32882268
Alignment:
Q  50 ctatcataccctttactatttattattctatcttctttcaattctttta 98  Q
    |||| ||| |||| ||||||||||| |||||||||||||||||||||||    
T  32882220 ctattataaccttaactatttattactctatcttctttcaattctttta 32882268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 96
Target Start/End: Complemental strand, 38052468 - 38052427
Alignment:
Q  55 ataccctttactatttattattctatcttctttcaattcttt 96  Q
    |||||||| | ||||||||||| |||||||||||||||||||    
T  38052468 atacccttaattatttattattttatcttctttcaattcttt 38052427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 9012484 - 9012520
Alignment:
Q  51 tatcataccctttactatttattattctatcttcttt 87  Q
    |||||| | ||||||||||||||||||||||||||||    
T  9012484 tatcattctctttactatttattattctatcttcttt 9012520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 19807009 - 19806961
Alignment:
Q  50 ctatcataccctttactatttattattctatcttctttcaattctttta 98  Q
    |||| ||| |||| ||||||||||| ||||||||||||||||| |||||    
T  19807009 ctattataaccttaactatttattactctatcttctttcaattatttta 19806961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 29086637 - 29086588
Alignment:
Q  50 ctatcataccctttactatttattattctatcttctttcaattcttttaa 99  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  29086637 ctatcataccctttactatttattgttctctcttctttcaattcttttaa 29086588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 96
Target Start/End: Complemental strand, 31023772 - 31023726
Alignment:
Q  50 ctatcataccctttactatttattattctatcttctttcaattcttt 96  Q
    |||| |||||||| ||||||||||||||| |||||||||| ||||||    
T  31023772 ctattatacccttaactatttattattctctcttctttcatttcttt 31023726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 92
Target Start/End: Original strand, 11030142 - 11030179
Alignment:
Q  55 ataccctttactatttattattctatcttctttcaatt 92  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  11030142 atacccttgactatttattattctctcttctttcaatt 11030179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 96
Target Start/End: Original strand, 13352559 - 13352596
Alignment:
Q  59 cctttactatttattattctatcttctttcaattcttt 96  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  13352559 ccttaactatttattactctatcttctttcaattcttt 13352596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 52 - 99
Target Start/End: Complemental strand, 43248569 - 43248522
Alignment:
Q  52 atcataccctttactatttattattctatcttctttcaattcttttaa 99  Q
    |||||||||||||||||| |||||| | | ||||||||||||||||||    
T  43248569 atcataccctttactattaattattttcttttctttcaattcttttaa 43248522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 96
Target Start/End: Complemental strand, 10198001 - 10197955
Alignment:
Q  50 ctatcataccctttactatttattattctatcttctttcaattcttt 96  Q
    |||| |||||||| ||||||||||| | |||||||||||||||||||    
T  10198001 ctattatacccttgactatttattactttatcttctttcaattcttt 10197955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 96
Target Start/End: Complemental strand, 21134589 - 21134543
Alignment:
Q  50 ctatcataccctttactatttattattctatcttctttcaattcttt 96  Q
    |||| ||| |||| ||||||||||||||| |||||||||||||||||    
T  21134589 ctattataaccttaactatttattattctctcttctttcaattcttt 21134543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 96
Target Start/End: Original strand, 42521430 - 42521476
Alignment:
Q  50 ctatcataccctttactatttattattctatcttctttcaattcttt 96  Q
    |||| |||||||| ||||||||||| ||| |||||||||||||||||    
T  42521430 ctataatacccttaactatttattactctttcttctttcaattcttt 42521476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 96
Target Start/End: Complemental strand, 30440573 - 30440532
Alignment:
Q  55 ataccctttactatttattattctatcttctttcaattcttt 96  Q
    ||||| || ||||||||||||||| |||||||||||||||||    
T  30440573 ataccattaactatttattattctctcttctttcaattcttt 30440532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 96
Target Start/End: Complemental strand, 24166781 - 24166749
Alignment:
Q  64 actatttattattctatcttctttcaattcttt 96  Q
    ||||||||||||||| |||||||||||||||||    
T  24166781 actatttattattctctcttctttcaattcttt 24166749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 96
Target Start/End: Original strand, 8050487 - 8050533
Alignment:
Q  50 ctatcataccctttactatttattattctatcttctttcaattcttt 96  Q
    |||| ||| |||| ||||||||||| |||||||||||||||||||||    
T  8050487 ctattataaccttgactatttattactctatcttctttcaattcttt 8050533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 96
Target Start/End: Complemental strand, 36302877 - 36302831
Alignment:
Q  50 ctatcataccctttactatttattattctatcttctttcaattcttt 96  Q
    |||| ||| |||| ||||||||||| |||||||||||||||||||||    
T  36302877 ctattataaccttaactatttattactctatcttctttcaattcttt 36302831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 6517592 - 6517544
Alignment:
Q  50 ctatcataccctttactatttattattctatcttctttcaattctttta 98  Q
    |||| ||| |||| ||||||||||| ||| |||||||||||||||||||    
T  6517592 ctattatatccttaactatttattactctttcttctttcaattctttta 6517544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 99
Target Start/End: Complemental strand, 9227893 - 9227857
Alignment:
Q  63 tactatttattattctatcttctttcaattcttttaa 99  Q
    |||||||||||||| |||||| |||||||||||||||    
T  9227893 tactatttattattttatcttttttcaattcttttaa 9227857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 37337124 - 37337172
Alignment:
Q  50 ctatcataccctttactatttattattctatcttctttcaattctttta 98  Q
    |||| ||| |||| ||||||||||| ||||||||||||||| |||||||    
T  37337124 ctattataaccttaactatttattactctatcttctttcaagtctttta 37337172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 96
Target Start/End: Complemental strand, 3598815 - 3598778
Alignment:
Q  59 cctttactatttattattctatcttctttcaattcttt 96  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  3598815 ccttaactatttattactctatcttctttcaattcttt 3598778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 96
Target Start/End: Complemental strand, 1513492 - 1513460
Alignment:
Q  64 actatttattattctatcttctttcaattcttt 96  Q
    ||||||||||| |||||||||||||||||||||    
T  1513492 actatttattactctatcttctttcaattcttt 1513460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 24524035 - 24524083
Alignment:
Q  50 ctatcataccctttactatttattattctatcttctttcaattctttta 98  Q
    |||| ||| |||| ||||||||||| | |||||||||||||||||||||    
T  24524035 ctattataaccttaactatttattactttatcttctttcaattctttta 24524083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 36652533 - 36652581
Alignment:
Q  50 ctatcataccctttactatttattattctatcttctttcaattctttta 98  Q
    |||| ||| |||| ||||||||||| ||| |||||||||||||||||||    
T  36652533 ctattatatccttaactatttattactctttcttctttcaattctttta 36652581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 25149493 - 25149447
Alignment:
Q  51 tatcataccctttactatttattattctatcttctttcaattcttttaa 99  Q
    |||||||||||||| ||||||||| |||  |||||||||||||||||||    
T  25149493 tatcataccctttattatttattactct--cttctttcaattcttttaa 25149447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University