View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19563_low_25 (Length: 350)
Name: NF19563_low_25
Description: NF19563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19563_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 42 - 334
Target Start/End: Complemental strand, 50747442 - 50747132
Alignment:
| Q |
42 |
acacttccaaacgctgctccacaaaatccaataaaactacccaacacaatttgccacccaaattccatttcctgcaacaatacaaataaacaaaagaagc |
141 |
Q |
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| T |
50747442 |
acacttccaaacgctgctccacaaaatccaataaaactacccaacacaatttgccacccaaattccatttcctgcaacaatacaaataaacaaaagaagc |
50747343 |
T |
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| Q |
142 |
actttattatattacccaaagttacaataactgacaaaaacat-----------------atccatagaatgaaggaataaa-ctaaatatttatctttt |
223 |
Q |
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| T |
50747342 |
actttattatattacccaaagttacaataactgacaaaaacatgtgaaaaacaaaaacatatccatagaatgaaggaataaaactaaatatttatctttt |
50747243 |
T |
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| Q |
224 |
gatttagattcaactttaagataaaacaaagacataaaatccaacagaaaagtgaaatcttaccggccacacgtgttgataacccgatccatctgatttc |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50747242 |
gatttagattcaactttaagataaaacaaagacataaaatccaacagaaaagtgaaatcttaccggccacacgtgttgataacccgatccatctgatttc |
50747143 |
T |
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| Q |
324 |
cataagaaatt |
334 |
Q |
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||||||||||| |
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| T |
50747142 |
cataagaaatt |
50747132 |
T |
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