View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19563_low_26 (Length: 346)
Name: NF19563_low_26
Description: NF19563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19563_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 21 - 331
Target Start/End: Complemental strand, 3149445 - 3149135
Alignment:
| Q |
21 |
aatagaagtccgagtcatttagacaatttctcctaggttagtgcaatttctccttaagatcaatcaaacaagaagacagacaaatcattagtaaatgtaa |
120 |
Q |
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| T |
3149445 |
aatagaagttcgattcttttagacaatttctcctaggttagtgcaatttctccttaagatcaatcaaacaagaagacagacaaatcattagtacatgtaa |
3149346 |
T |
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| Q |
121 |
gagtatggttctatgcacatctagtagaactgaaagctttaaatttcttggtcttgatttaaatccaagctaagtcagaagccatgcactgatttaataa |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3149345 |
gagtatggttctatgcacatctagtagaactgaaagctttaaatttcttggtcttgatttaaatccaagctaagtcagaagccatgcactgatttaataa |
3149246 |
T |
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| Q |
221 |
gttaaaacgataatatacaaacggcagcagcatttaataaaatcttaagaaccctacccatttccagatcagtaagcatgaaagatcttaccctactaga |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3149245 |
gttaaaacgataatatacaaacggcagcagcatttaataaaatcttaagaaccctacccatttccagatcagtaagcatgaaagatcttaccctactaga |
3149146 |
T |
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| Q |
321 |
cagaaagaaac |
331 |
Q |
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||||||||||| |
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| T |
3149145 |
cagaaagaaac |
3149135 |
T |
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