View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19563_low_3 (Length: 560)
Name: NF19563_low_3
Description: NF19563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19563_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 544
Target Start/End: Original strand, 32215281 - 32215823
Alignment:
| Q |
18 |
ggagcaaccatcatactttgatattaatcgagtcaaaatctttttagcaaaagttcatggtcctctacattcttataattgatatagtgacatgattgat |
117 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
32215281 |
ggagcaaccatcatattttgatattaatcgagtcaaaatctttttagcaaaagttcatggtcctccacattcttataattgacatagtgacatgattgat |
32215380 |
T |
|
| Q |
118 |
atcaattcgatnnnnnnnnntacctaacctaaattgaggattgagaaaaattaatatgataaattcctagtttcctacccatgaggacttgaatcaattg |
217 |
Q |
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||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32215381 |
atcgattcgataaaaaaaaaaacctaacctaaattgaggattgaggaaaattaatatgataaattcctagtttcctacccatgaggacttgaatcaattg |
32215480 |
T |
|
| Q |
218 |
tttcatataacctataagttcgtttttcataaactctcccaaccaaactgtcttacacaacttaactcaaataagccaatctaaatagactgtaaaccat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32215481 |
tttcatataacctataagttcgtttttcataaactctcccaaacaaactgtcttacacaacttaactcaaataagccaatctaaatagaccgtaaaccat |
32215580 |
T |
|
| Q |
318 |
gcatgatattttctcaccggctcttaaagataagaacatgttattagttctttcnnnnnnnaaagaagaacatgttatcagtt----------------- |
400 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32215581 |
gcatgatattttctcaccgactcttaaagataagaacatgttattagttctttctttttttaaagaagaacatgttatcagttagttggttgttctattg |
32215680 |
T |
|
| Q |
401 |
-agttggtacatctagttgctatgtgtaagcaataattcttacnnnnnnnnnngtagtatggattatctttatgtttttttaatttaattnnnnnnnnct |
499 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||| || |
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| T |
32215681 |
gagttggtacatctagttgctatgtgtaagcaataattctta--aaaaaaaaagtagtatggattatctttatgtctttttaatttgattaaaaaaaact |
32215778 |
T |
|
| Q |
500 |
ttttctttattattcttttatgttagaaattccgtctttattgtg |
544 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32215779 |
ttttctttattattcttttatgttagaaattccgtctttattgtg |
32215823 |
T |
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