View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19563_low_31 (Length: 325)

Name: NF19563_low_31
Description: NF19563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19563_low_31
NF19563_low_31
[»] chr5 (8 HSPs)
chr5 (2-159)||(34241383-34241538)
chr5 (204-309)||(34241583-34241688)
chr5 (2-135)||(34233610-34233743)
chr5 (26-114)||(42116871-42116960)
chr5 (26-92)||(42128052-42128118)
chr5 (26-134)||(42122614-42122723)
chr5 (19-97)||(41572853-41572929)
chr5 (204-254)||(34234338-34234388)
[»] chr2 (3 HSPs)
chr2 (40-102)||(32682495-32682557)
chr2 (62-134)||(11995282-11995353)
chr2 (62-99)||(12247609-12247646)
[»] chr4 (1 HSPs)
chr4 (26-111)||(11117294-11117380)
[»] chr8 (1 HSPs)
chr8 (74-111)||(30021068-30021105)
[»] chr3 (1 HSPs)
chr3 (26-102)||(8522263-8522340)


Alignment Details
Target: chr5 (Bit Score: 131; Significance: 6e-68; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 2 - 159
Target Start/End: Original strand, 34241383 - 34241538
Alignment:
Q  2 gaggagaagcaaaggtccaaccatgaataagatggtgcaaatgtcatagttttattattctggttattttctctattgtgtgttagtttttactttctgt 101  Q
    |||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  34241383 gaggagaaacaatggtccaaccatgaatcagatggtgcaaatgtcatagttttattattctggttattttctctattgtgtgttagtttttac--tctgt 34241480  T
Q  102 ttaaaataagttttgatgtgagtgtgacaatctatcgactcattcttatttgatctag 159  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  34241481 ttaaaataagttttgatgtgagtttgacaatctatcgactcattcttatttgatctag 34241538  T

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Target: chr5; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 204 - 309
Target Start/End: Original strand, 34241583 - 34241688
Alignment:
Q  204 catctaatttaatcagtacaaaattgagttttacaagtacacaaactgaaatgcccagaaagtccaacactagcaggcagcagcatgagcatttcattca 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34241583 catctaatttaatcagtacaaaattgagttttacaagtacacaaactgaaatgcccagaaagtccaacactagcaggcagcagcatgagcatttcattca 34241682  T
Q  304 tgtttt 309  Q
    ||||||    
T  34241683 tgtttt 34241688  T

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Target: chr5; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 2 - 135
Target Start/End: Original strand, 34233610 - 34233743
Alignment:
Q  2 gaggagaagcaaaggtccaaccatgaataagatggtgcaaatgtcatagttttattattctggttattttctctat--tgtgtgttagtttttactttct 99  Q
    |||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||  |||    
T  34233610 gaggagaaacaatggtccaaccatgaatcagatggtgcaaatgtcatagttttattattctggttattttctctattgtgtgtgttagtttttac--tct 34233707  T
Q  100 gtttaaaataagttttgatgtgagtgtgacaatcta 135  Q
    ||||||||||||||||| ||||||||| ||||||||    
T  34233708 gtttaaaataagttttggtgtgagtgtaacaatcta 34233743  T

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Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 114
Target Start/End: Complemental strand, 42116960 - 42116871
Alignment:
Q  26 gaataagatggtgcaaatgtcatagttttattattctggttattttctctattgtgtgttagt-ttttactttctgtttaaaataagttt 114  Q
    |||| ||||||||||||||||||||||||||| || | ||||||||||||||||||||||||| |||||||||||  |||||||||||||    
T  42116960 gaatcagatggtgcaaatgtcatagttttattgttgttgttattttctctattgtgtgttagttttttactttcttcttaaaataagttt 42116871  T

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Target: chr5; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 42128118 - 42128052
Alignment:
Q  26 gaataagatggtgcaaatgtcatagttttattattctggttattttctctattgtgtgttagttttt 92  Q
    |||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||    
T  42128118 gaatcagatggtgcaaatgtcatagttttattgttctagttattttctctattgtgtattagttttt 42128052  T

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Target: chr5; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 26 - 134
Target Start/End: Complemental strand, 42122723 - 42122614
Alignment:
Q  26 gaataagatggtgcaaatgtcatagttttattattctggttattttctctattgtgtgttag-tttttactttctgtttaaaataagttttga-tgtgag 123  Q
    |||| ||||||||||||||||||||||||||| || | |||| ||| ||| ||||||||| | ||||||||||||||||||||||| | |||| | ||||    
T  42122723 gaatcagatggtgcaaatgtcatagttttattgttgtagttactttatctgttgtgtgttggttttttactttctgtttaaaataa-tcttgattttgag 42122625  T
Q  124 tgtgacaatct 134  Q
    |||||||||||    
T  42122624 tgtgacaatct 42122614  T

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Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 41572853 - 41572929
Alignment:
Q  19 caaccatgaataagatggtgcaaatgtcatagttttattattctggttattttctctattgtgtgttagtttttacttt 97  Q
    ||||||||||| |||||||||| |||| ||||||||||| ||||| ||||||||||  || ||||||||||||| ||||    
T  41572853 caaccatgaattagatggtgcagatgtgatagttttattgttctgattattttctc--ttctgtgttagtttttccttt 41572929  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 34234338 - 34234388
Alignment:
Q  204 catctaatttaatcagtacaaaattgagttttacaagtacacaaactgaaa 254  Q
    |||||||| | || |||||||||||||||||| ||||||||||||| ||||    
T  34234338 catctaatcttattagtacaaaattgagttttgcaagtacacaaacagaaa 34234388  T

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Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 32682495 - 32682557
Alignment:
Q  40 aaatgtcatagttttattattctggttattttctctattgtgtgttagtttttactttctgtt 102  Q
    |||||||||||| ||||| || || ||||||||||||||||||||||||||||||||||||||    
T  32682495 aaatgtcatagtcttattgttgtgcttattttctctattgtgtgttagtttttactttctgtt 32682557  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 62 - 134
Target Start/End: Original strand, 11995282 - 11995353
Alignment:
Q  62 tggttattttctctattgtgtgttagtttttactttctgtttaaaataagttttgatgtgagtgtgacaatct 134  Q
    ||||||||||||||||||||||||||||||||| || | ||| ||||||| |||||| ||||||||| |||||    
T  11995282 tggttattttctctattgtgtgttagtttttaccttgtattttaaataag-tttgatctgagtgtgataatct 11995353  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 99
Target Start/End: Complemental strand, 12247646 - 12247609
Alignment:
Q  62 tggttattttctctattgtgtgttagtttttactttct 99  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  12247646 tggttattttctctattgtgtgttagtttttaccttct 12247609  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 11117380 - 11117294
Alignment:
Q  26 gaataagatggtgcaaatgtcatagttttattattctggttattttctctattgtgtgttag-tttttactttctgtttaaaataag 111  Q
    |||| ||||||||||||||||||||||||||| |  | |||| ||||||  ||| ||||| | ||||||||||||||||||||||||    
T  11117380 gaatcagatggtgcaaatgtcatagttttattgtcgtagttactttctccgttgggtgttggttttttactttctgtttaaaataag 11117294  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 111
Target Start/End: Complemental strand, 30021105 - 30021068
Alignment:
Q  74 ctattgtgtgttagtttttactttctgtttaaaataag 111  Q
    ||||||||||||||||||||| |||| |||||||||||    
T  30021105 ctattgtgtgttagtttttaccttctatttaaaataag 30021068  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 102
Target Start/End: Complemental strand, 8522340 - 8522263
Alignment:
Q  26 gaataagatggtgcaaatgtcatagttttattattctggttattttctctattgtgtgtt-agtttttactttctgtt 102  Q
    |||| |||||||||||||||| ||||||| || || |  ||||||||||| |||| ||||  ||||||||||||||||    
T  8522340 gaatcagatggtgcaaatgtcgtagttttgttgttgtaattattttctcttttgtctgttgggtttttactttctgtt 8522263  T

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