View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19563_low_32 (Length: 320)
Name: NF19563_low_32
Description: NF19563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19563_low_32 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 24517976 - 24517671
Alignment:
| Q |
1 |
tcaaccaattttcataatataccaaaaaattgcataaggagagaaccttagcttgcagaatatggtagctttgtgattacatatgcatcagaaaattcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
24517976 |
tcaaccaattttcataatataccaaaaaattccataaggagagaaccttagcttgcagaatatggtagctttgtgattacatatgcatgagaaacttcaa |
24517877 |
T |
|
| Q |
101 |
agtcagttaaaatggaatagagtcctgattgcacacattgctaatatttacatcaaaccacatccaaattaaattcaagcatcatacaaggccaaaatac |
200 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24517876 |
agtcagttaaaatgaaatagagtcctagatgcacacattgctaatatttacatcaaatcacgtccaaattaaattcaagcatcatacaaggccaaaatac |
24517777 |
T |
|
| Q |
201 |
atctagttgtaattgtgcatcccgcccatgcttaccaccacagttatcaacgcgtaaattttcagttgcatcaagcttccttcaaacgtctcttgttgtt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
24517776 |
atctagttgtaattgtgcatcccgcccatgcttaccaccacagttatcaacgcgtaaattttcagttgcatcaagcttcctccaaacgtctctcgttgtt |
24517677 |
T |
|
| Q |
301 |
tgttct |
306 |
Q |
| |
|
|||||| |
|
|
| T |
24517676 |
tgttct |
24517671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 11 - 306
Target Start/End: Complemental strand, 35456091 - 35455798
Alignment:
| Q |
11 |
ttcataatataccaaaaaattgcataaggagagaaccttagcttgcagaatatggtagctttgtgattacatatgcatcagaaaattcaaagtcagttaa |
110 |
Q |
| |
|
||||||| |||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||| ||| ||||||| ||| ||| |
|
|
| T |
35456091 |
ttcataacataccaaaaacttgcataaggagataaccttagctagcagaatatggtagctttgtgattacagatgcatgagagtcttcaaaggcagctaa |
35455992 |
T |
|
| Q |
111 |
aatggaatagagtcctgattgcacacattgctaatatttacatcaaaccacatccaaattaaattcaagcatcatacaaggccaaaatacatctagttgt |
210 |
Q |
| |
|
||| |||||||||| | ||||||||||||||| ||||||||||| ||||| | |||||||| || |||||||||||||||| |||||||| |||||| |
|
|
| T |
35455991 |
aataaaatagagtccaggttgcacacattgctagtatttacatcagaccacgttcaaattaagctcgagcatcatacaaggccggaatacatc-agttgt |
35455893 |
T |
|
| Q |
211 |
aattgtgcatcccgcccatgcttaccaccacagttatcaacgcgtaaattttcagttgcatcaagcttccttcaaacgtctcttgttgtttgttct |
306 |
Q |
| |
|
|||||||||||||||||| |||||| | ||||||||||||| ||||||||| ||||||||||||||||| |||||| |||| |||||||||||| |
|
|
| T |
35455892 |
aattgtgcatcccgcccacgcttacaatcacagttatcaac-agtaaattttatgttgcatcaagcttcctccaaacgcctctcgttgtttgttct |
35455798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University