View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19563_low_34 (Length: 312)
Name: NF19563_low_34
Description: NF19563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19563_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 17 - 305
Target Start/End: Complemental strand, 49985809 - 49985525
Alignment:
| Q |
17 |
aatcacatacattcacttctattttcacaaatcgttactagtgtatacttgttggcgttgtgtccggtgtacattttagtgtaaatgcttcttagcaaac |
116 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
49985809 |
aatcacatacaatcacttctattttcacaaatcgttactagtgtatacttgttggcgtcgtatccggtgtacattttagtgtaaatgcttcttagcaaac |
49985710 |
T |
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| Q |
117 |
actacaaaaattaagtaatacgtacataaattgtgaattagaaactttcatgtcttgtaacttaacgaagccagaaccaaagggaacagatttttggcct |
216 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
49985709 |
actacaaaaattaagtaatac----ataaattgtgaattagaaactttcgtgtcttgtaacttaacgaagccagaaccaaagggaacggattttgggcct |
49985614 |
T |
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| Q |
217 |
aacgcctacaaaatttgcagtcacacattcatcgttagaaccaacttcacttttctgaatctgaagtctcactatcaacataatctgtg |
305 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49985613 |
aatgcctacaaaatttgcagtcacacattcatcgttagaaccaacttcacttttctgaatctgaagtctcactatcaacataatctgtg |
49985525 |
T |
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