View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19563_low_35 (Length: 309)
Name: NF19563_low_35
Description: NF19563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19563_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 125 - 292
Target Start/End: Original strand, 42956093 - 42956260
Alignment:
| Q |
125 |
ctgaaacacaatgaattaagatagtgatagcctaaagtgttcacaacttttgagaattcaactctcgcaggtatctagatttaccggtcaagcaatgcaa |
224 |
Q |
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| T |
42956093 |
ctgaaacacaatgaattaagatagtgatagcctaaagtgttcacaacttttgagaattcaactctcgcaggtatctagatttaccggtcaagcaatgcaa |
42956192 |
T |
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| Q |
225 |
aaaattggatctaggaaccaccttggttaacaagttagctcgattgtcttcaccaacaactttcttca |
292 |
Q |
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| T |
42956193 |
aaaattggatctgggaaccaccttggttaacaagttagctcgattgtcttcaccgacaactttcttca |
42956260 |
T |
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Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 98
Target Start/End: Original strand, 42956009 - 42956095
Alignment:
| Q |
12 |
atgaacaaagatgttatcgcaacagcttttataaaaaacataagcaaaaactaacttggtaaattgtaaacacaattaatgatcctg |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
42956009 |
atgaacaaagatgttatcgcaacagcttttataaaaaacataggcaaaatctaacttggtaaattgtaaacacaattagtgatcctg |
42956095 |
T |
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