View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19563_low_38 (Length: 288)
Name: NF19563_low_38
Description: NF19563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19563_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 25743892 - 25743604
Alignment:
| Q |
1 |
ctatttttaatttatttcattcattctcatacaacaacacaaaataaaagacaagtcagttatcctaaaatcactagattgaaaatctacctttcaacgc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
25743892 |
ctatttttaatttatttcattcattctcatacaacaacacaaaataaaagacaagtcagttatcctagaatcacttgattgaaaatctacctttcaacgc |
25743793 |
T |
|
| Q |
101 |
taggggcataggttcgatactcttgcacaccggaaaaagacagtactcttactgccgttgtcaattcagtacattacnnnnnnnnacagtgataacttct |
200 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
25743792 |
taggggcataggttcgttactcttgcacaccggaaaaagacagtactcttactgccgttgtcaattcagtacattac-tttttttacagtgataacttct |
25743694 |
T |
|
| Q |
201 |
tctttttgggacaaagatgg---tgacaacaattcaagactaactaatnnnnnnncaacatgataactaccaactttgtcatgagaataa |
287 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
25743693 |
tctttttgggacaaagatggtgatgacaacaattcaagactaactaataaaaaaacaacatgataactaccaactttgtcatgagaataa |
25743604 |
T |
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