View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19563_low_4 (Length: 556)
Name: NF19563_low_4
Description: NF19563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19563_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 10 - 540
Target Start/End: Original strand, 3895268 - 3895795
Alignment:
| Q |
10 |
gcagagagtgctggggagaaagctagagattatgcttatgatgcaaaggaaagaaccaaggaaggagcgagttacatggctgataagacaaaagaaggag |
109 |
Q |
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| T |
3895268 |
gcagagagtgctggggagaaagctagagattatgcttatgatgcaaaggaaagaaccaaggaaggagcgagttacatggctgataagacaaaagaaggag |
3895367 |
T |
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| Q |
110 |
ctgagaaaacggcagagaagacgggggaggttgctgggtcggcgacagaggctttgaagagtgctggggaaatggcgaagaagacggcccaaggagcgtg |
209 |
Q |
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| T |
3895368 |
ctgagaaaacggcggagaagacgggggaggttgctgggtcggcgacagaggctttgaagagtgctggggaaatggcgaagaagacggcccaaggagcgtg |
3895467 |
T |
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| Q |
210 |
ggagacagcgaaggatgcaacacaaaagatcaaggagactgttgttggaaagnnnnnnnnnnnnnnnnnnnnncgtggtagtggtggttctggtgtagta |
309 |
Q |
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| T |
3895468 |
ggagacagcgaaggatgcaacacaaaagatcaaggagactgttgttggaaag---gatgatgatgatgatgatcgtggtagtggtggttctggtgtagta |
3895564 |
T |
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| Q |
310 |
gtagatgatggtgttcatgaattggggagtcagcgttatggtcagagtacgggttatggccagagtaagggttatggccagactcagagcaaggattatt |
409 |
Q |
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| T |
3895565 |
gtagatgatggtgttcatgaattggggagtcagcgttatggccagagtacgggttatggccagagtaagggttatggtcagactcagagcaaggattatt |
3895664 |
T |
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| Q |
410 |
gaaaacagttttaattaattaggataat-aatatcatcttgtgtatgtatctttatcaactttcaaagtgcaggtatgtttgttaacatgggttgcttaa |
508 |
Q |
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| T |
3895665 |
gaaaacagttttaattaa-tatgatcttgtgtatgtatatatgtatgtatctttatcaactttcaaagtgcaggtatgtttgttaacatgggttgcttaa |
3895763 |
T |
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| Q |
509 |
acccctcaagaaatttcttgtttggtactttt |
540 |
Q |
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| T |
3895764 |
acccctcaagaaatttcttgtttggtactttt |
3895795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 3895139 - 3895197
Alignment:
| Q |
13 |
gagagtgctggggagaaagctagagattatgcttatgatgcaaaggaaagaaccaagga |
71 |
Q |
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| T |
3895139 |
gagaatgctggagagaaggctagagattatgcttatgatgcaaaggagagaacaaagga |
3895197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 3895016 - 3895079
Alignment:
| Q |
10 |
gcagagagtgctggggagaaagctagagattatgcttatgatgcaaaggaaagaaccaaggaag |
73 |
Q |
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| T |
3895016 |
gcagagaatgctggagagaaagctagagactatgcttatgaggtaaaagacagaaccaatgaag |
3895079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 416 - 531
Target Start/End: Complemental strand, 28702640 - 28702512
Alignment:
| Q |
416 |
agttttaattaattaggataataatatcatcttgtgtatgtatc------tttatcaactttcaaagtgcaggtatgttt-------gttaacatgggtt |
502 |
Q |
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| T |
28702640 |
agttttaattaattaggataatgatgtgatctggtgtatgtatgcatacgtttatcaactttcgaagtgcatgtatgttttcagtttgttaacatgggtt |
28702541 |
T |
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| Q |
503 |
gcttaaacccctcaagaaatttcttgttt |
531 |
Q |
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| T |
28702540 |
gcttaaacccctcaagaaatttcttgttt |
28702512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 283 - 339
Target Start/End: Complemental strand, 28702740 - 28702684
Alignment:
| Q |
283 |
cgtggtagtggtggttctggtgtagtagtagatgatggtgttcatgaattggggagt |
339 |
Q |
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| T |
28702740 |
cgtggtagtggttgtgctggtgtggtagtagatgagcatgttcatgaattgaggagt |
28702684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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