View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19563_low_5 (Length: 516)

Name: NF19563_low_5
Description: NF19563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19563_low_5
NF19563_low_5
[»] chr5 (10 HSPs)
chr5 (18-499)||(7667713-7668182)
chr5 (137-246)||(10898626-10898734)
chr5 (426-460)||(5969971-5970005)
chr5 (409-461)||(14299421-14299473)
chr5 (291-375)||(29922985-29923069)
chr5 (429-460)||(22811080-22811111)
chr5 (414-460)||(2868365-2868411)
chr5 (155-244)||(10161748-10161836)
chr5 (35-106)||(7667589-7667661)
chr5 (429-461)||(24036626-24036658)
[»] chr7 (11 HSPs)
chr7 (287-400)||(40491659-40491772)
chr7 (156-242)||(27571785-27571870)
chr7 (414-460)||(29829312-29829358)
chr7 (416-461)||(26975301-26975346)
chr7 (432-463)||(44570701-44570732)
chr7 (414-460)||(12306819-12306865)
chr7 (189-242)||(5489923-5489975)
chr7 (415-460)||(44856735-44856780)
chr7 (414-454)||(3141015-3141055)
chr7 (165-241)||(33853596-33853670)
chr7 (429-461)||(38510380-38510412)
[»] chr4 (21 HSPs)
chr4 (122-239)||(2635052-2635168)
chr4 (175-246)||(25318989-25319059)
chr4 (414-460)||(33843807-33843853)
chr4 (296-378)||(38740287-38740369)
chr4 (169-218)||(42152981-42153030)
chr4 (188-244)||(33560646-33560701)
chr4 (429-460)||(17898086-17898117)
chr4 (429-460)||(36150629-36150660)
chr4 (346-400)||(17897799-17897853)
chr4 (287-385)||(22250307-22250405)
chr4 (184-242)||(32818447-32818504)
chr4 (323-408)||(5025575-5025660)
chr4 (165-246)||(18596971-18597051)
chr4 (322-383)||(48575500-48575561)
chr4 (416-460)||(1023863-1023907)
chr4 (339-403)||(5835812-5835876)
chr4 (136-215)||(12926794-12926871)
chr4 (337-381)||(20911809-20911853)
chr4 (342-386)||(24364097-24364141)
chr4 (409-461)||(46507975-46508027)
chr4 (367-403)||(53158836-53158872)
[»] chr6 (5 HSPs)
chr6 (165-242)||(1485223-1485300)
chr6 (335-385)||(1500029-1500079)
chr6 (194-244)||(2234289-2234338)
chr6 (431-460)||(5929682-5929711)
chr6 (52-116)||(33136534-33136598)
[»] chr2 (13 HSPs)
chr2 (414-461)||(4119370-4119417)
chr2 (199-247)||(3476502-3476549)
chr2 (424-460)||(44439350-44439386)
chr2 (429-460)||(10918652-10918683)
chr2 (429-460)||(15220819-15220850)
chr2 (429-460)||(23359958-23359989)
chr2 (421-455)||(5063926-5063960)
chr2 (339-381)||(11759769-11759811)
chr2 (160-242)||(37420274-37420355)
chr2 (414-459)||(4894100-4894145)
chr2 (342-378)||(4007116-4007152)
chr2 (340-384)||(7630539-7630583)
chr2 (170-246)||(33502922-33502997)
[»] chr3 (23 HSPs)
chr3 (125-242)||(38022329-38022444)
chr3 (414-460)||(42644302-42644348)
chr3 (321-372)||(584712-584763)
chr3 (429-460)||(7012680-7012711)
chr3 (132-239)||(7717453-7717559)
chr3 (429-460)||(10852743-10852774)
chr3 (429-460)||(23918882-23918913)
chr3 (335-378)||(30958166-30958209)
chr3 (335-378)||(30973978-30974021)
chr3 (414-456)||(3776622-3776664)
chr3 (125-235)||(3845196-3845305)
chr3 (409-459)||(24916581-24916631)
chr3 (156-242)||(35058284-35058369)
chr3 (414-456)||(48089633-48089675)
chr3 (124-246)||(52925684-52925805)
chr3 (188-245)||(6997114-6997170)
chr3 (322-379)||(32112110-32112167)
chr3 (414-459)||(35132218-35132262)
chr3 (339-404)||(53568009-53568074)
chr3 (289-385)||(32523240-32523336)
chr3 (294-385)||(34457192-34457283)
chr3 (337-385)||(44771859-44771907)
chr3 (172-240)||(48410891-48410958)
[»] chr1 (13 HSPs)
chr1 (160-218)||(24587836-24587894)
chr1 (409-461)||(5268314-5268366)
chr1 (429-461)||(7335910-7335942)
chr1 (429-460)||(4347038-4347069)
chr1 (342-385)||(47899389-47899432)
chr1 (406-460)||(29759715-29759769)
chr1 (414-460)||(34875032-34875078)
chr1 (165-242)||(9939805-9939881)
chr1 (414-459)||(11199379-11199424)
chr1 (160-244)||(15477824-15477907)
chr1 (341-381)||(22548209-22548249)
chr1 (429-461)||(32365142-32365174)
chr1 (338-378)||(40643029-40643069)
[»] scaffold0361 (1 HSPs)
scaffold0361 (409-460)||(14052-14103)
[»] chr8 (8 HSPs)
chr8 (335-382)||(4336565-4336612)
chr8 (342-381)||(18355759-18355798)
chr8 (429-460)||(19649234-19649265)
chr8 (414-460)||(4950579-4950625)
chr8 (430-460)||(38516346-38516376)
chr8 (342-383)||(26559859-26559900)
chr8 (416-460)||(2778609-2778653)
chr8 (340-380)||(35550307-35550347)
[»] scaffold0571 (1 HSPs)
scaffold0571 (340-400)||(7826-7886)


Alignment Details
Target: chr5 (Bit Score: 400; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 18 - 499
Target Start/End: Complemental strand, 7668182 - 7667713
Alignment:
Q  18 agttcatgttgaacagtaaattatttgtataaggcaaaagctgcaaattctagctacaagttggaatcattctggaggcaaattcaattatactcgagaa 117  Q
    ||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  7668182 agttcgtgttgaacagtaaattaattgtataaggcaaaagcttcaaattctagctacaagttggaatcattctggaggcaaattcaattctactcgagaa 7668083  T
Q  118 tgtctaagtgtatttttggtttcacttttggatgaaataaatttgagtctagaggtgtagaattaattcagacatctttgattgctcttgagtagaattg 217  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  7668082 tgtctaagtgtatttttggtttcacttttcgatgaaataaatttgagtctagaggtgtagaattaattcagacatctttggttgctcttgagtagaattg 7667983  T
Q  218 aattttgcctccagaattgattctaacttacttgaagctagaattggagcttttgttcttcaactcaccttacatgaatgtatccaagcgtaaactactt 317  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||           ||||||||||||||||||||    
T  7667982 aattttgcctccagaattgattctaacttacttgaagctagatttggagcttttgttgttcaactcacc-----------tatccaagcgtaaactactt 7667894  T
Q  318 catcttcaacttatttctagccaaaatcaattttaccaaatcaatccactcaaaatcaatttttgtcatagcagaagcaaacacacgcttagtaatattg 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  7667893 catcttcaacttatttctagccaaaatcaattttaccaaatcaatccactcaaaatcaattttt-tcatagcagaagcaaacacatgcttagtaatattg 7667795  T
Q  418 attctagctataagtgagttgaatgtaaagtgatttatgtttgattttgcctccagttaactggttggttctacctacaagt 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7667794 attctagctataagtgagttgaatgtaaagtgatttatgtttgattttgcctccagttaactggttggttctacctacaagt 7667713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 137 - 246
Target Start/End: Original strand, 10898626 - 10898734
Alignment:
Q  137 tttcacttttggatgaaataaatttgagtctagaggtgtagaattaattcagacatctttgattgctcttgagtagaattgaattttgcctccagaattg 236  Q
    ||||||||||||| |||  ||| |||| ||||||| ||| |||||||||  ||||| |||| ||||||| ||||| ||||| |||||||||| |||||||    
T  10898626 tttcacttttggaggaatcaaaattgattctagagctgtcgaattaattttgacatgtttggttgctctcgagtaaaattg-attttgcctctagaattg 10898724  T
Q  237 attctaactt 246  Q
    ||||||||||    
T  10898725 attctaactt 10898734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 426 - 460
Target Start/End: Original strand, 5969971 - 5970005
Alignment:
Q  426 tataagtgagttgaatgtaaagtgatttatgtttg 460  Q
    |||||||||||||||||||||||||||||||||||    
T  5969971 tataagtgagttgaatgtaaagtgatttatgtttg 5970005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 409 - 461
Target Start/End: Complemental strand, 14299473 - 14299421
Alignment:
Q  409 gtaatattgattctagctataagtgagttgaatgtaaagtgatttatgtttga 461  Q
    |||| ||||||||||| || |||||||||||| |||||||||||| |||||||    
T  14299473 gtaaaattgattctagataaaagtgagttgaaggtaaagtgatttgtgtttga 14299421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 375
Target Start/End: Original strand, 29922985 - 29923069
Alignment:
Q  291 atgaatgtatccaagcgtaaactacttcatcttcaacttatttctagccaaaatcaattttaccaaatcaatccactcaaaatca 375  Q
    |||||||||||||| | |||| |||||||  ||||||| | || ||| |||||||||||||||  ||||||| || |||||||||    
T  29922985 atgaatgtatccaaacataaattacttcacattcaactcacttatagtcaaaatcaattttacataatcaattcattcaaaatca 29923069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 460
Target Start/End: Complemental strand, 22811111 - 22811080
Alignment:
Q  429 aagtgagttgaatgtaaagtgatttatgtttg 460  Q
    ||||||||||||||||||||||||||||||||    
T  22811111 aagtgagttgaatgtaaagtgatttatgtttg 22811080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 414 - 460
Target Start/End: Original strand, 2868365 - 2868411
Alignment:
Q  414 attgattctagctataagtgagttgaatgtaaagtgatttatgtttg 460  Q
    ||||||| ||| || |||||||||||||||||||||||||| |||||    
T  2868365 attgattttagttaaaagtgagttgaatgtaaagtgatttaagtttg 2868411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 244
Target Start/End: Original strand, 10161748 - 10161836
Alignment:
Q  155 taaatttgagtctagaggtgtagaattaattcagacatctttgattgctcttgagtagaattgaattttgcctccagaattgattctaac 244  Q
    |||| |||| |||||| |||||||||| ||   ||||| |||||||| ||| || ||||||||| ||| ||||| |||||||||||||||    
T  10161748 taaaattgattctagatgtgtagaattgatcttgacatgtttgattgttctcgaatagaattgacttt-gcctctagaattgattctaac 10161836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 106
Target Start/End: Complemental strand, 7667661 - 7667589
Alignment:
Q  35 aaattatttgtataaggcaaaagctgcaaattctagctacaagttggaatc-attctggaggcaaattcaatt 106  Q
    |||||| ||| | ||| |||||||| |||||||||||| |||||| ||||| |||||| ||||||| ||||||    
T  7667661 aaattaattgcagaagtcaaaagctccaaattctagcttcaagttagaatcaattctgaaggcaaagtcaatt 7667589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 429 - 461
Target Start/End: Complemental strand, 24036658 - 24036626
Alignment:
Q  429 aagtgagttgaatgtaaagtgatttatgtttga 461  Q
    |||||||||||||||||| ||||||||||||||    
T  24036658 aagtgagttgaatgtaaaatgatttatgtttga 24036626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 287 - 400
Target Start/End: Original strand, 40491659 - 40491772
Alignment:
Q  287 ttacatgaatgtatccaagcgtaaactacttcatcttcaacttatttctagccaaaatcaattttaccaaatcaatccactcaaaatcaatttttgtcat 386  Q
    ||||||||||||||||||   ||||  |||| | |||||||| | || ||| |||||||||||||||  ||||||| ||||||||||||||| ||||||     
T  40491659 ttacatgaatgtatccaaaaataaatcactttaccttcaactcacttttagtcaaaatcaattttacagaatcaattcactcaaaatcaattcttgtcac 40491758  T
Q  387 agcagaagcaaaca 400  Q
     |||||| ||||||    
T  40491759 cgcagaaccaaaca 40491772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 242
Target Start/End: Original strand, 27571785 - 27571870
Alignment:
Q  156 aaatttgagtctagaggtgtagaattaattcagacatctttgattgctcttgagtagaattgaattttgcctccagaattgattcta 242  Q
    |||||||| || |||||||||||||| | ||  |||| |||||||||||| ||||| ||||| ||||| |||| |||||||||||||    
T  27571785 aaatttgattcaagaggtgtagaattgactcctacatgtttgattgctctcgagtataattg-attttacctcaagaattgattcta 27571870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 460
Target Start/End: Original strand, 29829312 - 29829358
Alignment:
Q  414 attgattctagctataagtgagttgaatgtaaagtgatttatgtttg 460  Q
    ||||||||| |||| || |||||||||||||||||||||||||||||    
T  29829312 attgattctggctaaaaatgagttgaatgtaaagtgatttatgtttg 29829358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 416 - 461
Target Start/End: Original strand, 26975301 - 26975346
Alignment:
Q  416 tgattctagctataagtgagttgaatgtaaagtgatttatgtttga 461  Q
    ||||| ||| ||||||||||||||||||||| ||||||||||||||    
T  26975301 tgattttagttataagtgagttgaatgtaaaatgatttatgtttga 26975346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 463
Target Start/End: Original strand, 44570701 - 44570732
Alignment:
Q  432 tgagttgaatgtaaagtgatttatgtttgatt 463  Q
    ||||||||||||||||||||||||||||||||    
T  44570701 tgagttgaatgtaaagtgatttatgtttgatt 44570732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 414 - 460
Target Start/End: Complemental strand, 12306865 - 12306819
Alignment:
Q  414 attgattctagctataagtgagttgaatgtaaagtgatttatgtttg 460  Q
    ||||||||| |||| ||||||||||||  ||||||||||||||||||    
T  12306865 attgattctggctaaaagtgagttgaagataaagtgatttatgtttg 12306819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 5489975 - 5489923
Alignment:
Q  189 acatctttgattgctcttgagtagaattgaattttgcctccagaattgattcta 242  Q
    |||| |||| |||||| ||||||||||| ||||||||||||| |||||||||||    
T  5489975 acatgtttggttgctcctgagtagaatt-aattttgcctccaaaattgattcta 5489923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 460
Target Start/End: Original strand, 44856735 - 44856780
Alignment:
Q  415 ttgattctagctataagtgagttgaatgtaaagtgatttatgtttg 460  Q
    ||||||||  ||| ||||||||||||||||||| ||||||||||||    
T  44856735 ttgattctgcctaaaagtgagttgaatgtaaagcgatttatgtttg 44856780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 414 - 454
Target Start/End: Original strand, 3141015 - 3141055
Alignment:
Q  414 attgattctagctataagtgagttgaatgtaaagtgattta 454  Q
    |||||||||  ||| ||||||||||||||||||||||||||    
T  3141015 attgattctttctacaagtgagttgaatgtaaagtgattta 3141055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 165 - 241
Target Start/End: Complemental strand, 33853670 - 33853596
Alignment:
Q  165 tctagaggtgtagaattaattcagacatctttgattgctcttgagtagaattgaattttgcctccagaattgattct 241  Q
    |||||||||||| |||| |||  ||||| ||| ||||||||  ||||||||| | ||||||||||||||||||||||    
T  33853670 tctagaggtgtataattgatttcgacatgtttaattgctctc-agtagaattca-ttttgcctccagaattgattct 33853596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 429 - 461
Target Start/End: Original strand, 38510380 - 38510412
Alignment:
Q  429 aagtgagttgaatgtaaagtgatttatgtttga 461  Q
    ||||||||||||| |||||||||||||||||||    
T  38510380 aagtgagttgaatataaagtgatttatgtttga 38510412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 122 - 239
Target Start/End: Original strand, 2635052 - 2635168
Alignment:
Q  122 taagtgtatttttggtttcacttttggatgaaataaatttgagtctagaggtgtagaattaattcagacatctttgattgctcttgagtagaattgaatt 221  Q
    ||||||||| ||||||||||||||| || | |  ||| |||| |||||| ||||| |||| |||  ||||| |||||||||| || ||||||| || |||    
T  2635052 taagtgtatgtttggtttcacttttagagggaccaaaattgattctagaagtgtaaaattgattttgacatgtttgattgcttttaagtagaactg-att 2635150  T
Q  222 ttgcctccagaattgatt 239  Q
    ||||||||||||||||||    
T  2635151 ttgcctccagaattgatt 2635168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 175 - 246
Target Start/End: Original strand, 25318989 - 25319059
Alignment:
Q  175 tagaattaattcagacatctttgattgctcttgagtagaattgaattttgcctccagaattgattctaactt 246  Q
    ||||||| |||  ||||| |||| ||||||| |||||||||||| ||||| |||||||||||||||||||||    
T  25318989 tagaattgattttgacatgtttggttgctctcgagtagaattga-ttttgtctccagaattgattctaactt 25319059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 460
Target Start/End: Complemental strand, 33843853 - 33843807
Alignment:
Q  414 attgattctagctataagtgagttgaatgtaaagtgatttatgtttg 460  Q
    ||||||||| |||| |||||||||| |||||||||||||||||||||    
T  33843853 attgattctggctaaaagtgagttggatgtaaagtgatttatgtttg 33843807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 378
Target Start/End: Complemental strand, 38740369 - 38740287
Alignment:
Q  296 tgtatccaagcgtaaactacttcatcttcaacttatttctagccaaaatcaattttaccaaatcaatccactcaaaatcaatt 378  Q
    ||||||||| | ||||  |||||| |||||||| | || || |||||||||||||||| |||||||| || ||||||||||||    
T  38740369 tgtatccaaacataaatcacttcaacttcaactcacttttatccaaaatcaattttacaaaatcaattcattcaaaatcaatt 38740287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 42153030 - 42152981
Alignment:
Q  169 gaggtgtagaattaattcagacatctttgattgctcttgagtagaattga 218  Q
    ||||||||||||| |||  ||||| |||||||||||||||||||||||||    
T  42153030 gaggtgtagaatttattttgacatgtttgattgctcttgagtagaattga 42152981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 33560701 - 33560646
Alignment:
Q  188 gacatctttgattgctcttgagtagaattgaattttgcctccagaattgattctaac 244  Q
    ||||| |||| ||||||| |||||||||||| ||||||||| |||||||||||||||    
T  33560701 gacatgtttggttgctctcgagtagaattga-ttttgcctctagaattgattctaac 33560646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 460
Target Start/End: Original strand, 17898086 - 17898117
Alignment:
Q  429 aagtgagttgaatgtaaagtgatttatgtttg 460  Q
    ||||||||||||||||||||||||||||||||    
T  17898086 aagtgagttgaatgtaaagtgatttatgtttg 17898117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 460
Target Start/End: Complemental strand, 36150660 - 36150629
Alignment:
Q  429 aagtgagttgaatgtaaagtgatttatgtttg 460  Q
    ||||||||||||||||||||||||||||||||    
T  36150660 aagtgagttgaatgtaaagtgatttatgtttg 36150629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 346 - 400
Target Start/End: Complemental strand, 17897853 - 17897799
Alignment:
Q  346 aattttaccaaatcaatccactcaaaatcaatttttgtcatagcagaagcaaaca 400  Q
    ||||| || |||||||| ||||||||||||||||||||||  |||||| ||||||    
T  17897853 aatttgacaaaatcaattcactcaaaatcaatttttgtcaccgcagaaccaaaca 17897799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 287 - 385
Target Start/End: Original strand, 22250307 - 22250405
Alignment:
Q  287 ttacatgaatgtatccaagcgtaaactacttcatcttcaacttatttctagccaaaatcaattttaccaaatcaatccactcaaaatcaatttttgtca 385  Q
    ||||||||||||||||||  |||||  ||||||  |||||||   || ||| || ||||||||||||  ||||||| | ||||||||||||| ||||||    
T  22250307 ttacatgaatgtatccaaatgtaaatcacttcacattcaactcgcttttagtcataatcaattttacagaatcaattccctcaaaatcaattgttgtca 22250405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 32818504 - 32818447
Alignment:
Q  184 ttcagacatctttgattgctcttgagtagaattgaattttgcctccagaattgattcta 242  Q
    ||||||||| |||| || || | |||||||||||| |||||||||||||||||||||||    
T  32818504 ttcagacatatttggtttctttcgagtagaattga-ttttgcctccagaattgattcta 32818447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 408
Target Start/End: Original strand, 5025575 - 5025660
Alignment:
Q  323 tcaacttatttctagccaaaatcaattttaccaaatcaatccactcaaaatcaatttttgtcatagcagaagcaaacacacgctta 408  Q
    |||||| | ||||| | |||||||||| ||| |||||||| || |||||||||||||| ||||  ||| || ||||||||| ||||    
T  5025575 tcaactcacttctaactaaaatcaattctacaaaatcaattcaatcaaaatcaattttagtcaccgcataaccaaacacacactta 5025660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 246
Target Start/End: Original strand, 18596971 - 18597051
Alignment:
Q  165 tctagaggtgtagaattaattcagacatctttgattgctcttgagtagaattgaattttgcctccagaattgattctaactt 246  Q
    ||||||| ||| |||| |||| |||||  ||||||| ||||  |||| |||||| |||| ||||||||||||||||||||||    
T  18596971 tctagagatgtcgaatcaatttagacaagtttgatttctctcaagtaaaattga-ttttacctccagaattgattctaactt 18597051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 383
Target Start/End: Original strand, 48575500 - 48575561
Alignment:
Q  322 ttcaacttatttctagccaaaatcaattttaccaaatcaatccactcaaaatcaatttttgt 383  Q
    ||||||| |||| || | |||||||||||||| |||||||| || ||||||| |||||||||    
T  48575500 ttcaactcatttttatcaaaaatcaattttacaaaatcaattcattcaaaattaatttttgt 48575561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 460
Target Start/End: Original strand, 1023863 - 1023907
Alignment:
Q  416 tgattctagctataagtgagttgaatgtaaagtgatttatgtttg 460  Q
    ||||| |||||| |||||||||||| |||||||||||| ||||||    
T  1023863 tgattttagctaaaagtgagttgaaggtaaagtgatttttgtttg 1023907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 403
Target Start/End: Original strand, 5835812 - 5835876
Alignment:
Q  339 caaaatcaattttaccaaatcaatccactcaaaatcaatttttgtcatagcagaagcaaacacac 403  Q
    ||||||||||| ||| |||||||| || |||||||||||||| |||| | || || |||||||||    
T  5835812 caaaatcaattctacaaaatcaattcaatcaaaatcaattttcgtcacaacataaccaaacacac 5835876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 215
Target Start/End: Original strand, 12926794 - 12926871
Alignment:
Q  136 gtttcacttttggatgaaataaatttgagtctagaggtgtagaattaattcagacatctttgattgctcttgagtagaat 215  Q
    |||| ||||||||| ||  |||| |||| |||||| ||||||||||||||  ||||| |||| ||||| |||||||||||    
T  12926794 gttttacttttggaggagctaaagttgattctagaagtgtagaattaatt--gacatatttggttgcttttgagtagaat 12926871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 337 - 381
Target Start/End: Complemental strand, 20911853 - 20911809
Alignment:
Q  337 gccaaaatcaattttaccaaatcaatccactcaaaatcaattttt 381  Q
    |||| ||||||||||||  ||||||| ||||||||||||||||||    
T  20911853 gccataatcaattttacataatcaattcactcaaaatcaattttt 20911809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 342 - 386
Target Start/End: Complemental strand, 24364141 - 24364097
Alignment:
Q  342 aatcaattttaccaaatcaatccactcaaaatcaatttttgtcat 386  Q
    ||||||||||||  ||||||| || ||||||||||||||||||||    
T  24364141 aatcaattttacataatcaattcattcaaaatcaatttttgtcat 24364097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 409 - 461
Target Start/End: Original strand, 46507975 - 46508027
Alignment:
Q  409 gtaatattgattctagctataagtgagttgaatgtaaagtgatttatgtttga 461  Q
    |||| ||||||||||  || |||||||| |||| |||||||||||||||||||    
T  46507975 gtaaaattgattctaaataaaagtgagtggaatataaagtgatttatgtttga 46508027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 367 - 403
Target Start/End: Complemental strand, 53158872 - 53158836
Alignment:
Q  367 tcaaaatcaatttttgtcatagcagaagcaaacacac 403  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  53158872 tcaaaatcaatttttgtcacagcagaaccaaacacac 53158836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 165 - 242
Target Start/End: Complemental strand, 1485300 - 1485223
Alignment:
Q  165 tctagaggtgtagaattaattca-gacatctttgattgctcttgagtagaattgaattttgcctccagaattgattcta 242  Q
    ||||||||||||||||| ||||  ||||| |||| |||||||||||||||||| ||||||||||  |||||||||||||    
T  1485300 tctagaggtgtagaattgattcttgacatgtttgtttgctcttgagtagaatt-aattttgcctttagaattgattcta 1485223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 335 - 385
Target Start/End: Original strand, 1500029 - 1500079
Alignment:
Q  335 tagccaaaatcaattttaccaaatcaatccactcaaaatcaatttttgtca 385  Q
    ||||||||||||||||||| |||||||| || |||||||||||||||||||    
T  1500029 tagccaaaatcaattttacaaaatcaattcagtcaaaatcaatttttgtca 1500079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 2234338 - 2234289
Alignment:
Q  194 tttgattgctcttgagtagaattgaattttgcctccagaattgattctaac 244  Q
    |||| |||||||||||||||||||| |||||||||| ||||||||||||||    
T  2234338 tttggttgctcttgagtagaattga-ttttgcctcctgaattgattctaac 2234289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 460
Target Start/End: Complemental strand, 5929711 - 5929682
Alignment:
Q  431 gtgagttgaatgtaaagtgatttatgtttg 460  Q
    ||||||||||||||||||||||||||||||    
T  5929711 gtgagttgaatgtaaagtgatttatgtttg 5929682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 116
Target Start/End: Original strand, 33136534 - 33136598
Alignment:
Q  52 caaaagctgcaaattctagctacaagttggaatcattctggaggcaaattcaattatactcgaga 116  Q
    ||||| || ||||||||||||   |||| |||||| |||||||| ||| ||||||||||||||||    
T  33136534 caaaaccttcaaattctagcttacagttcgaatcaatctggaggtaaaatcaattatactcgaga 33136598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 414 - 461
Target Start/End: Original strand, 4119370 - 4119417
Alignment:
Q  414 attgattctagctataagtgagttgaatgtaaagtgatttatgtttga 461  Q
    |||||||||||||| ||||||||  |||||||||||||||||||||||    
T  4119370 attgattctagctaaaagtgagtctaatgtaaagtgatttatgtttga 4119417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 3476549 - 3476502
Alignment:
Q  199 ttgctcttgagtagaattgaattttgcctccagaattgattctaactta 247  Q
    ||||||| ||||| |||||| ||||||||||||||||||||||||||||    
T  3476549 ttgctctcgagtaaaattga-ttttgcctccagaattgattctaactta 3476502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 460
Target Start/End: Complemental strand, 44439386 - 44439350
Alignment:
Q  424 gctataagtgagttgaatgtaaagtgatttatgtttg 460  Q
    |||||||||||||| ||||||||||||||||||||||    
T  44439386 gctataagtgagttaaatgtaaagtgatttatgtttg 44439350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 460
Target Start/End: Complemental strand, 10918683 - 10918652
Alignment:
Q  429 aagtgagttgaatgtaaagtgatttatgtttg 460  Q
    ||||||||||||||||||||||||||||||||    
T  10918683 aagtgagttgaatgtaaagtgatttatgtttg 10918652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 460
Target Start/End: Original strand, 15220819 - 15220850
Alignment:
Q  429 aagtgagttgaatgtaaagtgatttatgtttg 460  Q
    ||||||||||||||||||||||||||||||||    
T  15220819 aagtgagttgaatgtaaagtgatttatgtttg 15220850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 460
Target Start/End: Original strand, 23359958 - 23359989
Alignment:
Q  429 aagtgagttgaatgtaaagtgatttatgtttg 460  Q
    ||||||||||||||||||||||||||||||||    
T  23359958 aagtgagttgaatgtaaagtgatttatgtttg 23359989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 421 - 455
Target Start/End: Original strand, 5063926 - 5063960
Alignment:
Q  421 ctagctataagtgagttgaatgtaaagtgatttat 455  Q
    |||||||||||||||||||||||||||||| ||||    
T  5063926 ctagctataagtgagttgaatgtaaagtgagttat 5063960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 339 - 381
Target Start/End: Complemental strand, 11759811 - 11759769
Alignment:
Q  339 caaaatcaattttaccaaatcaatccactcaaaatcaattttt 381  Q
    ||||||||||||||| |||||||| |||||||| |||||||||    
T  11759811 caaaatcaattttacaaaatcaattcactcaaactcaattttt 11759769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 160 - 242
Target Start/End: Complemental strand, 37420355 - 37420274
Alignment:
Q  160 ttgagtctagaggtgtagaattaattcagacatctttgattgctcttgagtagaattgaattttgcctccagaattgattcta 242  Q
    |||| ||||||||||||||||| |||  ||||| ||||  | | || |||||||||||| ||||||||| |||||||||||||    
T  37420355 ttgattctagaggtgtagaattgattttgacatgtttggcttccctagagtagaattga-ttttgcctctagaattgattcta 37420274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 459
Target Start/End: Original strand, 4894100 - 4894145
Alignment:
Q  414 attgattctagctataagtgagttgaatgtaaagtgatttatgttt 459  Q
    |||||||||||||| || | ||||||| ||||||||||||||||||    
T  4894100 attgattctagctaaaattaagttgaaggtaaagtgatttatgttt 4894145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 342 - 378
Target Start/End: Complemental strand, 4007152 - 4007116
Alignment:
Q  342 aatcaattttaccaaatcaatccactcaaaatcaatt 378  Q
    |||||||||||| ||||||||||||| ||||||||||    
T  4007152 aatcaattttacaaaatcaatccacttaaaatcaatt 4007116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 340 - 384
Target Start/End: Original strand, 7630539 - 7630583
Alignment:
Q  340 aaaatcaattttaccaaatcaatccactcaaaatcaatttttgtc 384  Q
    |||||||||||||| |||||||| || ||||||||||| ||||||    
T  7630539 aaaatcaattttacaaaatcaattcattcaaaatcaatgtttgtc 7630583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 246
Target Start/End: Complemental strand, 33502997 - 33502922
Alignment:
Q  170 aggtgtagaattaattcagacatctttgattgctcttgagtagaattgaattttgcctccagaattgattctaactt 246  Q
    ||||||| |||| |||  ||||| |||| ||||||| ||||| || ||| |||||| ||||||||||||||||||||    
T  33502997 aggtgtaaaattgattttgacatgtttggttgctctcgagtaaaactga-ttttgcatccagaattgattctaactt 33502922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 242
Target Start/End: Original strand, 38022329 - 38022444
Alignment:
Q  125 gtgtatttttggtttcacttttggatgaaataaatttgagtctagaggtgtagaattaattcagacatctttgattgctcttgagtagaattgaattttg 224  Q
    |||||| ||||||||||||| | || | |  ||| |||| |||||| |||||||||| |||  | ||| |||||||||||   ||||||||||| |||||    
T  38022329 gtgtatgtttggtttcacttctagaaggaccaaagttgattctagaagtgtagaattgattttggcatgtttgattgctca--agtagaattgatttttg 38022426  T
Q  225 cctccagaattgattcta 242  Q
    |||||| |||||||||||    
T  38022427 cctccaaaattgattcta 38022444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 460
Target Start/End: Complemental strand, 42644348 - 42644302
Alignment:
Q  414 attgattctagctataagtgagttgaatgtaaagtgatttatgtttg 460  Q
    ||||||| ||| || ||||||||||||||||||||||||||||||||    
T  42644348 attgattttagttaaaagtgagttgaatgtaaagtgatttatgtttg 42644302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 372
Target Start/End: Complemental strand, 584763 - 584712
Alignment:
Q  321 cttcaacttatttctagccaaaatcaattttaccaaatcaatccactcaaaa 372  Q
    |||||||||| || |||| |||||||||||||| |||||||| |||||||||    
T  584763 cttcaacttaattttagctaaaatcaattttacaaaatcaattcactcaaaa 584712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 460
Target Start/End: Complemental strand, 7012711 - 7012680
Alignment:
Q  429 aagtgagttgaatgtaaagtgatttatgtttg 460  Q
    ||||||||||||||||||||||||||||||||    
T  7012711 aagtgagttgaatgtaaagtgatttatgtttg 7012680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 239
Target Start/End: Complemental strand, 7717559 - 7717453
Alignment:
Q  132 tttggtttcacttttggatgaaataaatttgagtctagaggtgtagaattaattcagacatctttgattgctcttgagtagaattgaattttgcctccag 231  Q
    ||||||| |||||||| ||||  |||| |||| | ||||||| |||| || |||  ||||| |||| || |||  |||||||||||| ||||||||||||    
T  7717559 tttggttccacttttgcatgagctaaaattgattgtagaggtttagagttgattttgacatgtttggttcctccagagtagaattga-ttttgcctccag 7717461  T
Q  232 aattgatt 239  Q
    ||||||||    
T  7717460 aattgatt 7717453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 460
Target Start/End: Original strand, 10852743 - 10852774
Alignment:
Q  429 aagtgagttgaatgtaaagtgatttatgtttg 460  Q
    ||||||||||||||||||||||||||||||||    
T  10852743 aagtgagttgaatgtaaagtgatttatgtttg 10852774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 460
Target Start/End: Complemental strand, 23918913 - 23918882
Alignment:
Q  429 aagtgagttgaatgtaaagtgatttatgtttg 460  Q
    ||||||||||||||||||||||||||||||||    
T  23918913 aagtgagttgaatgtaaagtgatttatgtttg 23918882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 378
Target Start/End: Original strand, 30958166 - 30958209
Alignment:
Q  335 tagccaaaatcaattttaccaaatcaatccactcaaaatcaatt 378  Q
    ||||||||||||||||||| |||||||| || ||||||||||||    
T  30958166 tagccaaaatcaattttacaaaatcaattcattcaaaatcaatt 30958209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 378
Target Start/End: Original strand, 30973978 - 30974021
Alignment:
Q  335 tagccaaaatcaattttaccaaatcaatccactcaaaatcaatt 378  Q
    ||||||||||||||||||| |||||||| || ||||||||||||    
T  30973978 tagccaaaatcaattttacaaaatcaattcattcaaaatcaatt 30974021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 414 - 456
Target Start/End: Complemental strand, 3776664 - 3776622
Alignment:
Q  414 attgattctagctataagtgagttgaatgtaaagtgatttatg 456  Q
    ||||||||| |||| || |||||||||||||||||||||||||    
T  3776664 attgattctggctaaaattgagttgaatgtaaagtgatttatg 3776622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 125 - 235
Target Start/End: Complemental strand, 3845305 - 3845196
Alignment:
Q  125 gtgtatttttggtttcacttttggatgaaataaatttgagtctagaggtgtagaattaattcagacatctttgattgctcttgagtagaattgaattttg 224  Q
    |||||| ||||||| ||||||||||  ||  ||| |||| ||||||||||||||||| |||  ||||| |||| ||| |||  |||||||||| ||| ||    
T  3845305 gtgtatgtttggttccacttttggagtaaccaaaattgattctagaggtgtagaattgattttgacatgtttgtttgatctcaagtagaattg-attctg 3845207  T
Q  225 cctccagaatt 235  Q
    |||| ||||||    
T  3845206 cctctagaatt 3845196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 409 - 459
Target Start/End: Complemental strand, 24916631 - 24916581
Alignment:
Q  409 gtaatattgattctagctataagtgagttgaatgtaaagtgatttatgttt 459  Q
    |||| ||||||||  |||| |||||||||||||||||| ||||||||||||    
T  24916631 gtaaaattgattcaggctaaaagtgagttgaatgtaaaatgatttatgttt 24916581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 156 - 242
Target Start/End: Original strand, 35058284 - 35058369
Alignment:
Q  156 aaatttgagtctagaggtgtagaattaattcagacatctttgattgctcttgagtagaattgaattttgcctccagaattgattcta 242  Q
    ||||| || ||||||| ||||||| |  |||  |||| |||||| ||||| |||||||||||| ||||||||| |||||||||||||    
T  35058284 aaattggattctagagatgtagaactgtttctcacatgtttgatggctctcgagtagaattga-ttttgcctcaagaattgattcta 35058369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 414 - 456
Target Start/End: Original strand, 48089633 - 48089675
Alignment:
Q  414 attgattctagctataagtgagttgaatgtaaagtgatttatg 456  Q
    ||||||||||| || |||||||||||||||||| |||||||||    
T  48089633 attgattctagttaaaagtgagttgaatgtaaaatgatttatg 48089675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 124 - 246
Target Start/End: Complemental strand, 52925805 - 52925684
Alignment:
Q  124 agtgtatttttggtttcacttttggatgaaataaatttgagtctagaggtgtagaattaattcagacatctttgattgctcttgagtagaattgaatttt 223  Q
    ||||||| || |||| |||||||||| ||   ||| |||| |||||||||||| |||| |||  ||||| |||| |||||||   |||||| | ||||||    
T  52925805 agtgtatgttcggttccacttttggaggagtcaaaattgattctagaggtgtataattgattttgacatgtttggttgctctcacgtagaa-tcaatttt 52925707  T
Q  224 gcctccagaattgattctaactt 246  Q
    ||||||| || ||||||||||||    
T  52925706 gcctccataactgattctaactt 52925684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 6997170 - 6997114
Alignment:
Q  188 gacatctttgattgctcttgagtagaattgaattttgcctccagaattgattctaact 245  Q
    ||||| |||||||||||||| |||||||  |||||||||||||  |||||||||||||    
T  6997170 gacatgtttgattgctcttgggtagaata-aattttgcctccaatattgattctaact 6997114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 379
Target Start/End: Original strand, 32112110 - 32112167
Alignment:
Q  322 ttcaacttatttctagccaaaatcaattttaccaaatcaatccactcaaaatcaattt 379  Q
    ||||||| |||| || ||| ||||||||||||  ||||||| ||||||||||||||||    
T  32112110 ttcaactcatttttatccataatcaattttacataatcaattcactcaaaatcaattt 32112167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 459
Target Start/End: Original strand, 35132218 - 35132262
Alignment:
Q  414 attgattctagctataagtgagttgaatgtaaagtgatttatgttt 459  Q
    |||||||||| ||| ||||||||| |||||||||||||||||||||    
T  35132218 attgattctaacta-aagtgagttaaatgtaaagtgatttatgttt 35132262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 404
Target Start/End: Original strand, 53568009 - 53568074
Alignment:
Q  339 caaaatcaattttaccaaatcaatccactcaaaatcaatttttgtcatagcagaagcaaacacacg 404  Q
    |||||||||||||   |||||||| |||||||||||||||||  |||| ||| || ||||||||||    
T  53568009 caaaatcaattttgtaaaatcaattcactcaaaatcaattttcatcatcgcataatcaaacacacg 53568074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 289 - 385
Target Start/End: Complemental strand, 32523336 - 32523240
Alignment:
Q  289 acatgaatgtatccaagcgtaaactacttcatcttcaacttatttctagccaaaatcaattttaccaaatcaatccactcaaaatcaatttttgtca 385  Q
    ||||||||| |||||| |  |||  |||| |||||||||| | || ||  |||||||||||||||| ||||||| |||  |||||||||| ||||||    
T  32523336 acatgaatgcatccaaacacaaatcactttatcttcaactaacttttaatcaaaatcaattttacctaatcaattcacctaaaatcaattcttgtca 32523240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 294 - 385
Target Start/End: Complemental strand, 34457283 - 34457192
Alignment:
Q  294 aatgtatccaagcgtaaactacttcatcttcaacttatttctagccaaaatcaattttaccaaatc-aatccactcaaaatcaatttttgtca 385  Q
    ||||| ||||| | |||||||||| | |||||||| |||| ||  |||||||||||||||  |||| ||| ||||||||| ||||||||||||    
T  34457283 aatgtgtccaaacataaactacttta-cttcaactcatttttaagcaaaatcaattttacataatctaattcactcaaaaacaatttttgtca 34457192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 337 - 385
Target Start/End: Original strand, 44771859 - 44771907
Alignment:
Q  337 gccaaaatcaattttaccaaatcaatccactcaaaatcaatttttgtca 385  Q
    |||||||||||||||||  ||||||| || |||||||||||| ||||||    
T  44771859 gccaaaatcaattttacataatcaattcattcaaaatcaattcttgtca 44771907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 172 - 240
Target Start/End: Complemental strand, 48410958 - 48410891
Alignment:
Q  172 gtgtagaattaattcagacatctttgattgctcttgagtagaattgaattttgcctccagaattgattc 240  Q
    |||| ||||| |||| || || |||||||||| | ||||||||||| |||||||||||| |||||||||    
T  48410958 gtgtggaattgattctgagatgtttgattgctttcgagtagaattg-attttgcctccaaaattgattc 48410891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 24587836 - 24587894
Alignment:
Q  160 ttgagtctagaggtgtagaattaattcagacatctttgattgctcttgagtagaattga 218  Q
    |||| ||||||||||||||||| |||  ||||| |||| ||||||||||||||||||||    
T  24587836 ttgattctagaggtgtagaattgattgtgacatgtttggttgctcttgagtagaattga 24587894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 409 - 461
Target Start/End: Complemental strand, 5268366 - 5268314
Alignment:
Q  409 gtaatattgattctagctataagtgagttgaatgtaaagtgatttatgtttga 461  Q
    |||| |||||||||  ||| ||||||||||||||||||||||||| |||||||    
T  5268366 gtaaaattgattctgcctaaaagtgagttgaatgtaaagtgatttttgtttga 5268314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 429 - 461
Target Start/End: Original strand, 7335910 - 7335942
Alignment:
Q  429 aagtgagttgaatgtaaagtgatttatgtttga 461  Q
    |||||||||||||||||||||||||||||||||    
T  7335910 aagtgagttgaatgtaaagtgatttatgtttga 7335942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 460
Target Start/End: Complemental strand, 4347069 - 4347038
Alignment:
Q  429 aagtgagttgaatgtaaagtgatttatgtttg 460  Q
    ||||||||||||||||||||||||||||||||    
T  4347069 aagtgagttgaatgtaaagtgatttatgtttg 4347038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 385
Target Start/End: Original strand, 47899389 - 47899432
Alignment:
Q  342 aatcaattttaccaaatcaatccactcaaaatcaatttttgtca 385  Q
    |||||||||||| |||||||| ||||||||||||||| ||||||    
T  47899389 aatcaattttacaaaatcaattcactcaaaatcaattcttgtca 47899432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 406 - 460
Target Start/End: Complemental strand, 29759769 - 29759715
Alignment:
Q  406 ttagtaatattgattctagctataagtgagttgaatgtaaagtgatttatgtttg 460  Q
    ||||||| ||||||| | | || |||||||||||||||||| |||||||||||||    
T  29759769 ttagtaaaattgattatggttaaaagtgagttgaatgtaaaatgatttatgtttg 29759715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 414 - 460
Target Start/End: Original strand, 34875032 - 34875078
Alignment:
Q  414 attgattctagctataagtgagttgaatgtaaagtgatttatgtttg 460  Q
    |||||||||||||| |||| |||||| ||||||||||||||| ||||    
T  34875032 attgattctagctaaaagtcagttgattgtaaagtgatttatctttg 34875078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 242
Target Start/End: Complemental strand, 9939881 - 9939805
Alignment:
Q  165 tctagaggtgtagaattaattcagacatctttgattgctcttgagtagaattgaattttgcctccagaattgattcta 242  Q
    |||||||||||| ||||||||  ||||| |||| || |||| ||||| ||||| |||||||| | |||||||||||||    
T  9939881 tctagaggtgtaaaattaattttgacatgtttggttcctctagagtataattg-attttgcccctagaattgattcta 9939805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 459
Target Start/End: Complemental strand, 11199424 - 11199379
Alignment:
Q  414 attgattctagctataagtgagttgaatgtaaagtgatttatgttt 459  Q
    |||||||||||||  |||||| |||||| |||||||||||||||||    
T  11199424 attgattctagcttaaagtgaattgaatttaaagtgatttatgttt 11199379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 160 - 244
Target Start/End: Complemental strand, 15477907 - 15477824
Alignment:
Q  160 ttgagtctagaggtgtagaattaattcagacatctttgattgctcttgagtagaattgaattttgcctccagaattgattctaac 244  Q
    |||| ||| |||||||| |||| ||| ||| || ||||||| |||| ||||| |||| |||||| |||||| |||||||||||||    
T  15477907 ttgattctggaggtgtacaattgatttagatatgtttgattactctcgagtataatt-aatttttcctccataattgattctaac 15477824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 341 - 381
Target Start/End: Complemental strand, 22548249 - 22548209
Alignment:
Q  341 aaatcaattttaccaaatcaatccactcaaaatcaattttt 381  Q
    ||||||||||||| |||||||| |||| |||||||||||||    
T  22548249 aaatcaattttacaaaatcaattcacttaaaatcaattttt 22548209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 429 - 461
Target Start/End: Complemental strand, 32365174 - 32365142
Alignment:
Q  429 aagtgagttgaatgtaaagtgatttatgtttga 461  Q
    |||||||||||||||||| ||||||||||||||    
T  32365174 aagtgagttgaatgtaaattgatttatgtttga 32365142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 338 - 378
Target Start/End: Original strand, 40643029 - 40643069
Alignment:
Q  338 ccaaaatcaattttaccaaatcaatccactcaaaatcaatt 378  Q
    ||||||||||||||||  ||||||| |||||||||||||||    
T  40643029 ccaaaatcaattttacagaatcaattcactcaaaatcaatt 40643069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 460
Target Start/End: Original strand, 14052 - 14103
Alignment:
Q  409 gtaatattgattctagctataagtgagttgaatgtaaagtgatttatgtttg 460  Q
    |||| ||||||||| |||| || ||||||||| |||||||||||||||||||    
T  14052 gtaaaattgattcttgctacaattgagttgaaggtaaagtgatttatgtttg 14103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 382
Target Start/End: Complemental strand, 4336612 - 4336565
Alignment:
Q  335 tagccaaaatcaattttaccaaatcaatccactcaaaatcaatttttg 382  Q
    |||||| |||||||||||| |||||||| ||||||||||||| |||||    
T  4336612 tagccacaatcaattttacaaaatcaattcactcaaaatcaaattttg 4336565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 381
Target Start/End: Complemental strand, 18355798 - 18355759
Alignment:
Q  342 aatcaattttaccaaatcaatccactcaaaatcaattttt 381  Q
    |||||||||||| |||||||| ||||||||||||||||||    
T  18355798 aatcaattttacaaaatcaattcactcaaaatcaattttt 18355759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 460
Target Start/End: Complemental strand, 19649265 - 19649234
Alignment:
Q  429 aagtgagttgaatgtaaagtgatttatgtttg 460  Q
    ||||||||||||||||||||||||||||||||    
T  19649265 aagtgagttgaatgtaaagtgatttatgtttg 19649234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 414 - 460
Target Start/End: Complemental strand, 4950625 - 4950579
Alignment:
Q  414 attgattctagctataagtgagttgaatgtaaagtgatttatgtttg 460  Q
    ||||||| | ||||||| ||||||||| |||||||||||||||||||    
T  4950625 attgattattgctataattgagttgaaggtaaagtgatttatgtttg 4950579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 430 - 460
Target Start/End: Complemental strand, 38516376 - 38516346
Alignment:
Q  430 agtgagttgaatgtaaagtgatttatgtttg 460  Q
    |||||||||||||||||||||||||||||||    
T  38516376 agtgagttgaatgtaaagtgatttatgtttg 38516346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 383
Target Start/End: Complemental strand, 26559900 - 26559859
Alignment:
Q  342 aatcaattttaccaaatcaatccactcaaaatcaatttttgt 383  Q
    ||||||||||| ||||||||| ||||||||||||||| ||||    
T  26559900 aatcaattttatcaaatcaattcactcaaaatcaattcttgt 26559859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 460
Target Start/End: Complemental strand, 2778653 - 2778609
Alignment:
Q  416 tgattctagctataagtgagttgaatgtaaagtgatttatgtttg 460  Q
    |||||||||||| ||||||||||||  ||||||||||||| ||||    
T  2778653 tgattctagctaaaagtgagttgaagataaagtgatttatttttg 2778609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 340 - 380
Target Start/End: Original strand, 35550307 - 35550347
Alignment:
Q  340 aaaatcaattttaccaaatcaatccactcaaaatcaatttt 380  Q
    |||||||||||||| |||||||| || ||||||||||||||    
T  35550307 aaaatcaattttacaaaatcaattcaatcaaaatcaatttt 35550347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0571 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 340 - 400
Target Start/End: Original strand, 7826 - 7886
Alignment:
Q  340 aaaatcaattttaccaaatcaatccactcaaaatcaatttttgtcatagcagaagcaaaca 400  Q
    |||||||| ||||| | | ||||||| |||||||||||||||||||| ||| || ||||||    
T  7826 aaaatcaactttacaagaccaatccattcaaaatcaatttttgtcatcgcataaccaaaca 7886  T

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