View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19563_low_51 (Length: 248)
Name: NF19563_low_51
Description: NF19563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19563_low_51 |
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Alignment Details
Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 23 - 230
Target Start/End: Complemental strand, 2777141 - 2776933
Alignment:
| Q |
23 |
atacaagacattaaacatcaactcctagacatacaagttgttgagacctccaatcatacacattattgagaacaataatttaaaccagtaaactaaatat |
122 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2777141 |
atacaagacattaaacatcaactcctaaacatacaagttgttgagaccattaatcatacacattattgagaacaataatttaaaccagtaaactaaatat |
2777042 |
T |
|
| Q |
123 |
caatcccctattgcattaggaatatgaaagtatttcaagcttttcacat--accataagaaaaaccaaggaaaataattcacactttcataaataagttc |
220 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2777041 |
caatcccctattgcattaagaatatgaaagtatttcaagcttttcatatagaccataagaaaaaccaaggaaaataattcacac-ttcataaataagttc |
2776943 |
T |
|
| Q |
221 |
taatagcaat |
230 |
Q |
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|||||||||| |
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| T |
2776942 |
taatagcaat |
2776933 |
T |
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