View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19563_low_53 (Length: 245)

Name: NF19563_low_53
Description: NF19563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19563_low_53
NF19563_low_53
[»] chr5 (14 HSPs)
chr5 (91-157)||(23963134-23963200)
chr5 (91-159)||(42879878-42879946)
chr5 (91-157)||(13382353-13382419)
chr5 (91-159)||(13490664-13490732)
chr5 (91-157)||(2677251-2677317)
chr5 (91-159)||(5578360-5578428)
chr5 (91-159)||(39537167-39537234)
chr5 (91-158)||(9409314-9409381)
chr5 (91-157)||(18889350-18889415)
chr5 (91-160)||(6769103-6769173)
chr5 (112-157)||(41871408-41871453)
chr5 (111-159)||(38915383-38915431)
chr5 (91-156)||(8805778-8805843)
chr5 (91-159)||(7850906-7850975)
[»] chr7 (14 HSPs)
chr7 (91-157)||(31072277-31072343)
chr7 (91-157)||(8389048-8389114)
chr7 (91-157)||(1623816-1623882)
chr7 (91-159)||(18667650-18667718)
chr7 (111-159)||(12383095-12383143)
chr7 (91-159)||(20394537-20394605)
chr7 (91-157)||(4540145-4540210)
chr7 (91-159)||(6188834-6188903)
chr7 (91-159)||(6195350-6195419)
chr7 (111-159)||(15678515-15678563)
chr7 (91-159)||(23305931-23305999)
chr7 (91-156)||(48239056-48239122)
chr7 (91-159)||(8070179-8070248)
chr7 (91-159)||(48637287-48637356)
[»] chr8 (14 HSPs)
chr8 (91-159)||(7972734-7972802)
chr8 (100-157)||(31597816-31597873)
chr8 (91-156)||(16730013-16730079)
chr8 (91-157)||(45117739-45117806)
chr8 (91-157)||(1981869-1981935)
chr8 (91-159)||(40971710-40971779)
chr8 (91-159)||(7263404-7263472)
chr8 (91-157)||(3762967-3763034)
chr8 (111-159)||(9137993-9138041)
chr8 (91-156)||(11647864-11647930)
chr8 (91-159)||(6926984-6927053)
chr8 (95-156)||(15663431-15663492)
chr8 (91-159)||(28517066-28517135)
chr8 (91-159)||(9381592-9381660)
[»] chr2 (17 HSPs)
chr2 (91-159)||(7444195-7444263)
chr2 (91-159)||(22575735-22575803)
chr2 (91-159)||(27861589-27861657)
chr2 (91-157)||(19686077-19686143)
chr2 (91-157)||(33014946-33015012)
chr2 (111-159)||(18580965-18581013)
chr2 (111-159)||(38698796-38698844)
chr2 (91-159)||(41302042-41302111)
chr2 (91-159)||(29303772-29303840)
chr2 (91-159)||(2554341-2554410)
chr2 (91-155)||(14904694-14904759)
chr2 (91-159)||(41825714-41825783)
chr2 (91-157)||(44313796-44313862)
chr2 (91-159)||(2566203-2566272)
chr2 (91-155)||(18780604-18780669)
chr2 (91-159)||(45276929-45276998)
chr2 (96-159)||(31548611-31548675)
[»] chr1 (19 HSPs)
chr1 (91-159)||(8737652-8737720)
chr1 (91-157)||(21906664-21906730)
chr1 (91-157)||(48999687-48999753)
chr1 (91-159)||(23663860-23663928)
chr1 (91-157)||(27430550-27430617)
chr1 (91-156)||(25095453-25095518)
chr1 (91-154)||(17967080-17967143)
chr1 (91-157)||(26465349-26465416)
chr1 (91-157)||(5049739-5049805)
chr1 (91-157)||(22070787-22070852)
chr1 (91-157)||(34306997-34307063)
chr1 (111-159)||(1345793-1345841)
chr1 (91-158)||(9023713-9023780)
chr1 (114-156)||(47396853-47396895)
chr1 (91-153)||(48596107-48596169)
chr1 (91-159)||(26222292-26222361)
chr1 (91-159)||(42722822-42722891)
chr1 (111-159)||(9371556-9371604)
chr1 (111-159)||(32175702-32175750)
[»] scaffold0093 (1 HSPs)
scaffold0093 (92-157)||(51133-51198)
[»] chr4 (16 HSPs)
chr4 (91-156)||(39480007-39480072)
chr4 (91-157)||(10094773-10094839)
chr4 (91-157)||(28803659-28803725)
chr4 (92-157)||(7413496-7413561)
chr4 (92-157)||(7459577-7459642)
chr4 (95-157)||(24610836-24610898)
chr4 (111-159)||(14032329-14032377)
chr4 (91-159)||(36214003-36214070)
chr4 (91-159)||(14191741-14191810)
chr4 (91-159)||(28142875-28142944)
chr4 (116-157)||(41508856-41508897)
chr4 (91-159)||(51890299-51890368)
chr4 (91-159)||(51890572-51890641)
chr4 (96-157)||(23935648-23935710)
chr4 (91-159)||(51338242-51338311)
chr4 (111-159)||(38054148-38054196)
[»] chr6 (9 HSPs)
chr6 (91-157)||(1603656-1603722)
chr6 (91-157)||(18675638-18675703)
chr6 (91-157)||(34043829-34043895)
chr6 (91-159)||(1423240-1423307)
chr6 (91-159)||(20990724-20990792)
chr6 (111-159)||(31473857-31473905)
chr6 (91-160)||(15060427-15060497)
chr6 (91-157)||(21442867-21442933)
chr6 (91-157)||(22011869-22011935)
[»] chr3 (18 HSPs)
chr3 (91-157)||(10993915-10993981)
chr3 (91-157)||(15761143-15761209)
chr3 (111-159)||(1418210-1418258)
chr3 (91-157)||(25071927-25071992)
chr3 (91-156)||(33100186-33100251)
chr3 (111-159)||(1425062-1425110)
chr3 (111-159)||(22918436-22918484)
chr3 (111-158)||(30378909-30378956)
chr3 (91-157)||(19157378-19157444)
chr3 (111-157)||(27941269-27941315)
chr3 (111-159)||(11830150-11830198)
chr3 (111-159)||(36641829-36641877)
chr3 (91-155)||(40145761-40145824)
chr3 (96-159)||(52448432-52448495)
chr3 (91-159)||(6024181-6024250)
chr3 (91-147)||(16876635-16876692)
chr3 (98-159)||(30190263-30190325)
chr3 (91-159)||(31884385-31884454)
[»] scaffold0311 (1 HSPs)
scaffold0311 (112-159)||(4573-4620)


Alignment Details
Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 91 - 157
Target Start/End: Original strand, 23963134 - 23963200
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacgg 157  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  23963134 ttatgatgcattatgtaagggcccttttttcatattatgcctaaggcctataaaactctaggaacgg 23963200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 42879878 - 42879946
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||    
T  42879878 ttatgatctattatgtaagggcccttttttcatattatgcctaaggcccgtaaaactctaggaacggcc 42879946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 91 - 157
Target Start/End: Complemental strand, 13382419 - 13382353
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacgg 157  Q
    |||||||  |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  13382419 ttatgatccattatgtaagggcccttttttcatattatgcctaaggcctgtaaaactctaggaacgg 13382353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 13490664 - 13490732
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    |||| |||||||||||||  ||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  13490664 ttataatgtattatgtaatggcccttttttcatattatgcctaaggcctgtaaaactctagaaacggcc 13490732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 91 - 157
Target Start/End: Original strand, 2677251 - 2677317
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacgg 157  Q
    |||||||| |||||||||| |||||||||| |||||||||||||||||  |||||||||||||||||    
T  2677251 ttatgatgcattatgtaagggccctttttttatattatgcctaaggcccgtaaaactctaggaacgg 2677317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 5578428 - 5578360
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    ||||||||||||||||||| | | |||||||||||||||| |||||||  |||||||||||||||||||    
T  5578428 ttatgatgtattatgtaagggactttttttcatattatgcttaaggcccgtaaaactctaggaacggcc 5578360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 39537234 - 39537167
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    ||||||||||||||||||| ||||||||| |||||||||| ||||||||  ||||||||||||||||||    
T  39537234 ttatgatgtattatgtaagggcccttttt-catattatgcataaggcctgcaaaactctaggaacggcc 39537167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 91 - 158
Target Start/End: Complemental strand, 9409381 - 9409314
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacggc 158  Q
    ||||||| ||||||||||   |||||||||||||||||||||||| || |||||||||||||||||||    
T  9409381 ttatgatctattatgtaatgacccttttttcatattatgcctaagacccataaaactctaggaacggc 9409314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 91 - 157
Target Start/End: Original strand, 18889350 - 18889415
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacgg 157  Q
    |||||||| |||||||||| |||||||| |||||||| |||||||||| ||||||||||||||||||    
T  18889350 ttatgatgcattatgtaagggccctttt-tcatattacgcctaaggccgataaaactctaggaacgg 18889415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 160
Target Start/End: Complemental strand, 6769173 - 6769103
Alignment:
Q  91 ttatgatgtattatgtaagtgc-ccttttttcatattatgcctaaggcctataaaactctaggaacggcct 160  Q
    |||||||||||||| |||| |  |||||| ||||||||||| |||||||| ||||||||||||||||||||    
T  6769173 ttatgatgtattatctaaggggaccttttctcatattatgcttaaggcctgtaaaactctaggaacggcct 6769103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 157
Target Start/End: Original strand, 41871408 - 41871453
Alignment:
Q  112 cccttttttcatattatgcctaaggcctataaaactctaggaacgg 157  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||    
T  41871408 cccttttttcatactatgcctaaggcctgtaaaactctaggaacgg 41871453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 38915431 - 38915383
Alignment:
Q  111 gcccttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    ||||||| ||||||| ||||||||||||| |||||||||||||||||||    
T  38915431 gccctttattcatatcatgcctaaggcctgtaaaactctaggaacggcc 38915383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 156
Target Start/End: Complemental strand, 8805843 - 8805778
Alignment:
Q  91 ttatgatgtattatgtaag-tgcccttttttcatattatgcctaaggcctataaaactctaggaacg 156  Q
    ||||||||||||||||||| |||| |||| || |||| ||||||| |||| ||||||||||||||||    
T  8805843 ttatgatgtattatgtaaggtgcctttttctcgtatt-tgcctaaagcctgtaaaactctaggaacg 8805778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 7850906 - 7850975
Alignment:
Q  91 ttatgatgtattatgtaagtgccc-ttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    ||||||||||||||||||| |||| |||||||  | |||||||||||||  | |||| ||||||||||||    
T  7850906 ttatgatgtattatgtaagggcccattttttcgaactatgcctaaggccccttaaacactaggaacggcc 7850975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 91 - 157
Target Start/End: Complemental strand, 31072343 - 31072277
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacgg 157  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  31072343 ttatgatgcattatgtaagggcccttttttcatattatgcctaaggcccataaaactctaggaacgg 31072277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 91 - 157
Target Start/End: Complemental strand, 8389114 - 8389048
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacgg 157  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||    
T  8389114 ttatgatgcattatgtaagggcccttttttcatattatgcctaaggcccgtaaaactctaggaacgg 8389048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 91 - 157
Target Start/End: Original strand, 1623816 - 1623882
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacgg 157  Q
    |||||||| |||||||||  |||||||||||||||||||||||||| |  |||||||||||||||||    
T  1623816 ttatgatgcattatgtaaaggcccttttttcatattatgcctaaggtccgtaaaactctaggaacgg 1623882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 18667650 - 18667718
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    |||| |||||||||||||| ||||| |||| |||||||||||||||||  |||||| ||||||||||||    
T  18667650 ttataatgtattatgtaagagccctatttttatattatgcctaaggcccgtaaaacactaggaacggcc 18667718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 12383095 - 12383143
Alignment:
Q  111 gcccttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    |||||||||||||| |||||||||||||  |||||||||||||||||||    
T  12383095 gcccttttttcatactatgcctaaggcccgtaaaactctaggaacggcc 12383143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 20394605 - 20394537
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    ||||||||||||||||||| | |||||||| ||||||||| |||||||  ||||||| || ||||||||    
T  20394605 ttatgatgtattatgtaagggacctttttttatattatgcataaggcccgtaaaactttaagaacggcc 20394537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 157
Target Start/End: Original strand, 4540145 - 4540210
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacgg 157  Q
    |||||||  |||||||||| |||||||| ||||||||||||||| ||||  ||||||||||||||||    
T  4540145 ttatgatacattatgtaagggccctttt-tcatattatgcctaaagcctgaaaaactctaggaacgg 4540210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 6188903 - 6188834
Alignment:
Q  91 ttatgatgtattatgtaagtgccc-ttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    ||||||||||||||||||| |||| |||||||| | |||||||||||||  | |||| ||||||||||||    
T  6188903 ttatgatgtattatgtaagggcccattttttcaaactatgcctaaggccccttaaacgctaggaacggcc 6188834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 6195419 - 6195350
Alignment:
Q  91 ttatgatgtattatgtaagtgccc-ttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    ||||||||||||||||||| |||| |||||||| | |||||||||||||  | |||| ||||||||||||    
T  6195419 ttatgatgtattatgtaagggcccattttttcaaactatgcctaaggccccttaaacgctaggaacggcc 6195350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 15678563 - 15678515
Alignment:
Q  111 gcccttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    |||||||||||||| |||||||||| ||  |||||||||||||||||||    
T  15678563 gcccttttttcatactatgcctaagacccgtaaaactctaggaacggcc 15678515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 23305931 - 23305999
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    ||||||| |||||||||||  ||||||||||| | |||||||||| ||  |||||| ||||||||||||    
T  23305931 ttatgatatattatgtaaggacccttttttcaaactatgcctaagacccttaaaacgctaggaacggcc 23305999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 156
Target Start/End: Original strand, 48239056 - 48239122
Alignment:
Q  91 ttatgatgtattatgtaagtgccc-ttttttcatattatgcctaaggcctataaaactctaggaacg 156  Q
    ||||||||||||||||||| |||| |||||||| | |||||||||||||  | |||| |||||||||    
T  48239056 ttatgatgtattatgtaagggcccattttttcaaactatgcctaaggccccttaaacgctaggaacg 48239122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 8070179 - 8070248
Alignment:
Q  91 ttatgatgtattatgtaagtgccc-ttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    ||||||||||||||||||| |||| |||||||| | |||||||||||||  | |||| ||||||| ||||    
T  8070179 ttatgatgtattatgtaagggcccattttttcaaactatgcctaaggccccttaaacgctaggaatggcc 8070248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 48637287 - 48637356
Alignment:
Q  91 ttatgatgtattatgtaagtgccc-ttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    ||||||||||||||||||| |||| |||||||  | |||||||||||||  | |||| ||||||||||||    
T  48637287 ttatgatgtattatgtaagggcccattttttcgaactatgcctaaggccccttaaacactaggaacggcc 48637356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 7972802 - 7972734
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    ||||||| |||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7972802 ttatgatctattatgtaaggacccttttttcatattatgcctaaggcccataaaactctaggaacggcc 7972734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 100 - 157
Target Start/End: Original strand, 31597816 - 31597873
Alignment:
Q  100 attatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacgg 157  Q
    |||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||    
T  31597816 attatgtaagggtccttttttcatattatgcctaaggcctgtaaaactctaggaacgg 31597873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 91 - 156
Target Start/End: Original strand, 16730013 - 16730079
Alignment:
Q  91 ttatgatgtattatgtaagtgccctttt-ttcatattatgcctaaggcctataaaactctaggaacg 156  Q
    ||||||||||||||||||| | |||||| ||||||||||||||||||||  ||||||||||||||||    
T  16730013 ttatgatgtattatgtaagggacctttttttcatattatgcctaaggcccgtaaaactctaggaacg 16730079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 91 - 157
Target Start/End: Original strand, 45117739 - 45117806
Alignment:
Q  91 ttatgatgtattatgtaagtgccctttt-ttcatattatgcctaaggcctataaaactctaggaacgg 157  Q
    |||||||| |||||||||| ||| |||| ||||||||||||||||||||  |||||||||||||||||    
T  45117739 ttatgatgcattatgtaagggccatttttttcatattatgcctaaggcccgtaaaactctaggaacgg 45117806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 157
Target Start/End: Original strand, 1981869 - 1981935
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacgg 157  Q
    |||||||| ||||| ||||  |||||||||||||||||| ||||||||  |||||||||||||||||    
T  1981869 ttatgatgcattatataaggacccttttttcatattatgtctaaggcccgtaaaactctaggaacgg 1981935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 40971710 - 40971779
Alignment:
Q  91 ttatgatgtattatgtaagtg-cccttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    |||| |||||||||||||| | |||||||||||||||||||||||||||  |||||  ||||||||||||    
T  40971710 ttataatgtattatgtaagggacccttttttcatattatgcctaaggcccgtaaaatgctaggaacggcc 40971779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 7263472 - 7263404
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    |||| |||||||||||||| ||||| |||| ||||||||| |||||||  |||||| ||||||||||||    
T  7263472 ttataatgtattatgtaagggccctatttttatattatgcataaggcccgtaaaacgctaggaacggcc 7263404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 157
Target Start/End: Original strand, 3762967 - 3763034
Alignment:
Q  91 ttatgatgtattatgtaagtgccctttt-ttcatattatgcctaaggcctataaaactctaggaacgg 157  Q
    |||||||| |||||||||| ||| |||| ||||||||||||||||||||  |||||||||||| ||||    
T  3762967 ttatgatgcattatgtaagggccttttttttcatattatgcctaaggcccgtaaaactctaggcacgg 3763034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 9137993 - 9138041
Alignment:
Q  111 gcccttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    ||||||||||||||||||||||||||||  ||||| |||||||| ||||    
T  9137993 gcccttttttcatattatgcctaaggcccgtaaaattctaggaatggcc 9138041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 156
Target Start/End: Complemental strand, 11647930 - 11647864
Alignment:
Q  91 ttatgatgtattatgtaagtgcc-cttttttcatattatgcctaaggcctataaaactctaggaacg 156  Q
    |||||||||||||||| || | | ||||| |||||||||| |||||| || ||||||||||||||||    
T  11647930 ttatgatgtattatgttaggggctcttttctcatattatgtctaaggtctgtaaaactctaggaacg 11647864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 6927053 - 6926984
Alignment:
Q  91 ttatgatgtattatgtaagtgccc-ttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    ||||||| ||||||||||| |||| |||||||| | |||||||||||||  | |||| ||||||||||||    
T  6927053 ttatgatttattatgtaagggcccattttttcaaactatgcctaaggccccttaaacgctaggaacggcc 6926984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 156
Target Start/End: Original strand, 15663431 - 15663492
Alignment:
Q  95 gatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacg 156  Q
    ||||||||||||||| | |||||| |||||||||| ||||| ||  ||||||| ||||||||    
T  15663431 gatgtattatgtaaggggccttttctcatattatgtctaagcccgctaaaactataggaacg 15663492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 28517066 - 28517135
Alignment:
Q  91 ttatgatgtattatgtaagtgccc-ttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    ||||||| ||||||||||| |||| |||||||| | |||||||||||||  | |||| ||||||||||||    
T  28517066 ttatgatttattatgtaagggcccattttttcaaactatgcctaaggccccttaaacgctaggaacggcc 28517135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 9381660 - 9381592
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    ||||||||||||||||| | | | |||| ||||||||||||||||  |  ||||||||||| |||||||    
T  9381660 ttatgatgtattatgtaggggtcattttctcatattatgcctaagatccttaaaactctagaaacggcc 9381592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 7444195 - 7444263
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||  |||||||||||||||||||    
T  7444195 ttatgatgtattatgtaagggcccttttttcatattatgcctaagacccgtaaaactctaggaacggcc 7444263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 22575803 - 22575735
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||    
T  22575803 ttatgatctattatgtaagggcccttttttcatattatgcctaaggcccgtaaaactctaggaacggcc 22575735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 27861657 - 27861589
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||  |||||||||||||||||||    
T  27861657 ttatgatgtattttgtaagggcccttttttcatattatgcctaaggcccgtaaaactctaggaacggcc 27861589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 91 - 157
Target Start/End: Original strand, 19686077 - 19686143
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacgg 157  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||    
T  19686077 ttatgatgcattatgtaagggcccttttttcatattatgcctaaggcccgtaaaactctaggaacgg 19686143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 91 - 157
Target Start/End: Complemental strand, 33015012 - 33014946
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacgg 157  Q
    |||||||| |||||||||| |||||||||||||||||||| |||| ||  |||||||||||||||||    
T  33015012 ttatgatgcattatgtaagggcccttttttcatattatgcataagacccgtaaaactctaggaacgg 33014946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 18581013 - 18580965
Alignment:
Q  111 gcccttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||    
T  18581013 gcccttttttcatactatgcctaaggcctgtaaaactctaggaacggcc 18580965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 38698796 - 38698844
Alignment:
Q  111 gcccttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||    
T  38698796 gcccttttttcatactatgcctaaggcctgtaaaactctaggaacggcc 38698844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 41302111 - 41302042
Alignment:
Q  91 ttatgatgtattatgtaagtg-cccttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    |||||| ||||||| |||| | ||||||| |||||||||||||||||||  |||||||||||||||||||    
T  41302111 ttatgacgtattatataaggggcccttttctcatattatgcctaaggcccgtaaaactctaggaacggcc 41302042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 29303772 - 29303840
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    ||||||||||||||||||| |||||||| ||| | |||||||||||||  | |||| ||||||||||||    
T  29303772 ttatgatgtattatgtaagggcccttttgtcaaactatgcctaaggccccttaaacgctaggaacggcc 29303840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 2554341 - 2554410
Alignment:
Q  91 ttatgatgtattatgtaagtgc-ccttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    |||| |||||||||||||| |  |||||||||||||||||||||||| |  |||||| ||||||||||||    
T  2554341 ttataatgtattatgtaaggggtccttttttcatattatgcctaaggtccgtaaaacgctaggaacggcc 2554410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 155
Target Start/End: Original strand, 14904694 - 14904759
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttt-tcatattatgcctaaggcctataaaactctaggaac 155  Q
    ||||||||||||||||||| | | ||||| ||||||||||| |||||||  |||||||||||||||    
T  14904694 ttatgatgtattatgtaaggggcttttttctcatattatgcttaaggcccctaaaactctaggaac 14904759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 41825783 - 41825714
Alignment:
Q  91 ttatgatgtattatgtaagtgc-ccttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    |||| |||||||||||||| |  |||||||||||||||||||||||| |  |||||| ||||||||||||    
T  41825783 ttataatgtattatgtaaggggtccttttttcatattatgcctaaggtccgtaaaacgctaggaacggcc 41825714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 157
Target Start/End: Complemental strand, 44313862 - 44313796
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacgg 157  Q
    |||||||| ||||| |||   ||||||||| |||||||| ||||||||  |||||||||||||||||    
T  44313862 ttatgatgcattatataaagaccctttttttatattatgtctaaggcccgtaaaactctaggaacgg 44313796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 2566203 - 2566272
Alignment:
Q  91 ttatgatgtattatgtaagtgccc-ttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    ||||||| ||||||||||| | || |||||||| | |||||||||||||  |||||| ||||||||||||    
T  2566203 ttatgatatattatgtaagggtccattttttcaaactatgcctaaggcccttaaaacgctaggaacggcc 2566272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 155
Target Start/End: Complemental strand, 18780669 - 18780604
Alignment:
Q  91 ttatgatgtattatgtaagtgccc-ttttttcatattatgcctaaggcctataaaactctaggaac 155  Q
    ||||||| ||||||||||| |||| |||||||| | |||||||||||||  |||||| ||||||||    
T  18780669 ttatgatatattatgtaagggcccattttttcaaactatgcctaaggcccttaaaacgctaggaac 18780604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 45276998 - 45276929
Alignment:
Q  91 ttatgatgtattatgtaagtgccc-ttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    ||||||| ||||||||||| |||| |||||||| | |||||||||||||  | |||| ||||||||||||    
T  45276998 ttatgatttattatgtaagggcccattttttcaaactatgcctaaggccccttaaacgctaggaacggcc 45276929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 159
Target Start/End: Complemental strand, 31548675 - 31548611
Alignment:
Q  96 atgtattatgtaagtg-cccttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    |||||||||||||| | ||||||| |||||||| | ||||| ||| ||||||||||| |||||||    
T  31548675 atgtattatgtaagggacccttttctcatattaagtctaagacctgtaaaactctagaaacggcc 31548611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 8737720 - 8737652
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||| |||||||    
T  8737720 ttatgatgtattatgtaagggcccttttttcatattatgcctaaggcccgtaaaactctagaaacggcc 8737652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 91 - 157
Target Start/End: Original strand, 21906664 - 21906730
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacgg 157  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||    
T  21906664 ttatgatgcattatgtaagggcccttttttcatattatgcctaaggcccataaaattctaggaacgg 21906730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 91 - 157
Target Start/End: Original strand, 48999687 - 48999753
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacgg 157  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||    
T  48999687 ttatgatgcattatgtaagggcccttttttcatattatgcctaaggcccgtaaaactctaggaacgg 48999753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 23663928 - 23663860
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    ||||||||||||||||  | | ||||||||||||||||||||||||||  |||||||||||||||||||    
T  23663928 ttatgatgtattatgttggggaccttttttcatattatgcctaaggcccgtaaaactctaggaacggcc 23663860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 91 - 157
Target Start/End: Complemental strand, 27430617 - 27430550
Alignment:
Q  91 ttatgatgtattatgtaagtgccctttttt-catattatgcctaaggcctataaaactctaggaacgg 157  Q
    |||||||| |||||||||| ||| |||||| ||||||||||||||||||| |||||||||||||||||    
T  27430617 ttatgatgcattatgtaagggccttttttttcatattatgcctaaggcctgtaaaactctaggaacgg 27430550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 91 - 156
Target Start/End: Original strand, 25095453 - 25095518
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacg 156  Q
    |||||||||||||||| || | |||| |||||||||||||||||||||  ||||||||||||||||    
T  25095453 ttatgatgtattatgttagggaccttctttcatattatgcctaaggcccgtaaaactctaggaacg 25095518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 91 - 154
Target Start/End: Complemental strand, 17967143 - 17967080
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaa 154  Q
    |||||||| ||||||||||   ||||||||||||||||||||||||||  ||||||||||||||    
T  17967143 ttatgatgcattatgtaaggatccttttttcatattatgcctaaggcccgtaaaactctaggaa 17967080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 91 - 157
Target Start/End: Original strand, 26465349 - 26465416
Alignment:
Q  91 ttatgatgtattatgtaagtgccctttt-ttcatattatgcctaaggcctataaaactctaggaacgg 157  Q
    |||||||| |||||||||  |||||||| ||||||||||||||||||||  |||||||||||||||||    
T  26465349 ttatgatgcattatgtaaaggccctttttttcatattatgcctaaggcccgtaaaactctaggaacgg 26465416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 157
Target Start/End: Original strand, 5049739 - 5049805
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacgg 157  Q
    |||||||| ||||| |||| ||| ||||||||||||||||||| ||||  |||||||||||||||||    
T  5049739 ttatgatgcattatataagggcctttttttcatattatgcctagggcccgtaaaactctaggaacgg 5049805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 157
Target Start/End: Original strand, 22070787 - 22070852
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacgg 157  Q
    |||||||| |||||||||| ||||||||| ||||| ||||||||||||  |||||||||||||||||    
T  22070787 ttatgatgcattatgtaagggcccttttt-catataatgcctaaggcccgtaaaactctaggaacgg 22070852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 157
Target Start/End: Complemental strand, 34307063 - 34306997
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacgg 157  Q
    |||||||  |||||||||| ||| |||||||||||| |||||||||||| ||||||||||| |||||    
T  34307063 ttatgatccattatgtaagggcctttttttcatattgtgcctaaggcctgtaaaactctagaaacgg 34306997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 1345841 - 1345793
Alignment:
Q  111 gcccttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    |||||||||||||| |||||||||||||| ||||||| |||||||||||    
T  1345841 gcccttttttcatactatgcctaaggcctgtaaaactttaggaacggcc 1345793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 158
Target Start/End: Original strand, 9023713 - 9023780
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacggc 158  Q
    ||||||||||||||||||| |  | ||| ||||||||||||||||| |  ||||||||||||||||||    
T  9023713 ttatgatgtattatgtaaggggtcctttctcatattatgcctaaggtccgtaaaactctaggaacggc 9023780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 114 - 156
Target Start/End: Complemental strand, 47396895 - 47396853
Alignment:
Q  114 cttttttcatattatgcctaaggcctataaaactctaggaacg 156  Q
    ||||| |||||||||||||||| ||||||||||||||||||||    
T  47396895 cttttctcatattatgcctaagacctataaaactctaggaacg 47396853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 153
Target Start/End: Complemental strand, 48596169 - 48596107
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctagga 153  Q
    |||||||| ||||| |||| |||||||||  |||||||||||||| ||  |||||||||||||    
T  48596169 ttatgatgcattatataagggccctttttctatattatgcctaagacccgtaaaactctagga 48596107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 26222292 - 26222361
Alignment:
Q  91 ttatgatgtattatgtaagtgccc-ttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    ||||||| ||||||||||| | || |||||||| | |||||||||||||  |||||| ||||||||||||    
T  26222292 ttatgatatattatgtaagggtccattttttcaaactatgcctaaggcccttaaaacgctaggaacggcc 26222361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 42722822 - 42722891
Alignment:
Q  91 ttatgatgtattatgtaagtgccc-ttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    ||||||||||||||||||| |||| |||||||  | |||||||||||||  | |||| ||||||||||||    
T  42722822 ttatgatgtattatgtaagggcccattttttcgaactatgcctaaggccccttaaacactaggaacggcc 42722891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 9371604 - 9371556
Alignment:
Q  111 gcccttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    |||||||||||||| |||||||||| ||  ||||||| |||||||||||    
T  9371604 gcccttttttcatactatgcctaagacccgtaaaactttaggaacggcc 9371556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 32175750 - 32175702
Alignment:
Q  111 gcccttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    |||||||||||||| |||||| ||| ||  |||||||||||||||||||    
T  32175750 gcccttttttcatactatgcccaagacccgtaaaactctaggaacggcc 32175702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 92 - 157
Target Start/End: Original strand, 51133 - 51198
Alignment:
Q  92 tatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacgg 157  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||    
T  51133 tatgatgcattatgtaagggcccttttttcatattatgcctaaggcccgtaaaactctaggaacgg 51198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 91 - 156
Target Start/End: Complemental strand, 39480072 - 39480007
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacg 156  Q
    ||||||| |||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||    
T  39480072 ttatgatctattatgtaaggacccttttttcatattatgcctaaggcccataaaactctaggaacg 39480007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 91 - 157
Target Start/End: Complemental strand, 10094839 - 10094773
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacgg 157  Q
    |||||||| ||||| |||| ||||||||||||||||||||||||||||  |||||||||||||||||    
T  10094839 ttatgatgcattatataagggcccttttttcatattatgcctaaggcccgtaaaactctaggaacgg 10094773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 91 - 157
Target Start/End: Complemental strand, 28803725 - 28803659
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacgg 157  Q
    |||||||| |||||||||| ||| ||||||||||||||||||||||||  |||||||||||||||||    
T  28803725 ttatgatgcattatgtaagggccattttttcatattatgcctaaggcccgtaaaactctaggaacgg 28803659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 7413561 - 7413496
Alignment:
Q  92 tatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacgg 157  Q
    ||||||| |||||||||| |||||||||||||||||||| |||||||  |||||||||||||||||    
T  7413561 tatgatgcattatgtaagggcccttttttcatattatgcgtaaggcccgtaaaactctaggaacgg 7413496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 7459642 - 7459577
Alignment:
Q  92 tatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacgg 157  Q
    ||||||| |||||||||| |||||||||||||||||||| |||||||  |||||||||||||||||    
T  7459642 tatgatgcattatgtaagggcccttttttcatattatgcgtaaggcccgtaaaactctaggaacgg 7459577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 157
Target Start/End: Complemental strand, 24610898 - 24610836
Alignment:
Q  95 gatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacgg 157  Q
    ||||||||||||||| |||||||| |||||||||||||||  ||| ||||||||| |||||||    
T  24610898 gatgtattatgtaagggcccttttctcatattatgcctaaaacctgtaaaactctcggaacgg 24610836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 14032377 - 14032329
Alignment:
Q  111 gcccttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    |||||||||||||| |||||||||||||  |||||||||||||||||||    
T  14032377 gcccttttttcatactatgcctaaggcccgtaaaactctaggaacggcc 14032329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 36214003 - 36214070
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    ||||||| ||||||||||| ||||||||||||||||||| | |||| |  |||||||||||||||||||    
T  36214003 ttatgatctattatgtaagggcccttttttcatattatgtc-aaggtccgtaaaactctaggaacggcc 36214070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 14191810 - 14191741
Alignment:
Q  91 ttatgatgtattatgtaagtgccc-ttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    ||||||| ||||||||||| |||| |||||||| | |||||||||||||  |||||| ||||||||||||    
T  14191810 ttatgatatattatgtaagggcccattttttcaaactatgcctaaggcccttaaaacgctaggaacggcc 14191741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 28142944 - 28142875
Alignment:
Q  91 ttatgatgtattatgtaagtgccc-ttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    ||||||||||||||||||| |||| |||||||| | |||||||||||||  | |||| ||||||||||||    
T  28142944 ttatgatgtattatgtaagggcccattttttcaaactatgcctaaggccccttaaacgctaggaacggcc 28142875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 157
Target Start/End: Complemental strand, 41508897 - 41508856
Alignment:
Q  116 tttttcatattatgcctaaggcctataaaactctaggaacgg 157  Q
    ||||||||||||||||||||| || |||||||||||||||||    
T  41508897 tttttcatattatgcctaaggtctgtaaaactctaggaacgg 41508856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 51890368 - 51890299
Alignment:
Q  91 ttatgatgtattatgtaagtg-cccttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    ||||||| ||||||||||| | ||||||| |||||||||||| ||||||  |||||||||||||| ||||    
T  51890368 ttatgatttattatgtaaggggcccttttatcatattatgcccaaggcccctaaaactctaggaatggcc 51890299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 51890641 - 51890572
Alignment:
Q  91 ttatgatgtattatgtaagtg-cccttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    ||||||| ||||||||||| | ||||||| |||||||||||| ||||||  |||||||||||||| ||||    
T  51890641 ttatgatttattatgtaaggggcccttttatcatattatgcccaaggcccctaaaactctaggaatggcc 51890572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 157
Target Start/End: Complemental strand, 23935710 - 23935648
Alignment:
Q  96 atgtattatgtaagtg-cccttttttcatattatgcctaaggcctataaaactctaggaacgg 157  Q
    |||||||||||||| | |||| || |||||||||| ||||||||  |||||||||||||||||    
T  23935710 atgtattatgtaaggggccctcttctcatattatgtctaaggcccgtaaaactctaggaacgg 23935648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 51338242 - 51338311
Alignment:
Q  91 ttatgatgtattatgtaagtgccc-ttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    ||||||||||||||||||| |||| |||||||  | |||||||||||||  | |||| ||||||||||||    
T  51338242 ttatgatgtattatgtaagggcccattttttcgaactatgcctaaggccccttaaacactaggaacggcc 51338311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 38054148 - 38054196
Alignment:
Q  111 gcccttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    |||||||||||||| |||  | ||||||| |||||||||||||||||||    
T  38054148 gcccttttttcatactatatccaaggcctgtaaaactctaggaacggcc 38054196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 91 - 157
Target Start/End: Original strand, 1603656 - 1603722
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacgg 157  Q
    |||||||| |||||||||| |||||||||| |||||||||||||||||  |||||||||||||||||    
T  1603656 ttatgatgcattatgtaagggccctttttttatattatgcctaaggcccgtaaaactctaggaacgg 1603722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 91 - 157
Target Start/End: Original strand, 18675638 - 18675703
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacgg 157  Q
    ||||||||||||||||||| |||||||| ||||||||||| ||||||| ||||||||||||||||||    
T  18675638 ttatgatgtattatgtaagggccctttt-tcatattatgcttaaggcccataaaactctaggaacgg 18675703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 91 - 157
Target Start/End: Original strand, 34043829 - 34043895
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacgg 157  Q
    |||||||| |||||||||| |||||||||||||||||||| |||||||  |||||||||||||||||    
T  34043829 ttatgatgcattatgtaagggcccttttttcatattatgcgtaaggcccgtaaaactctaggaacgg 34043895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 1423240 - 1423307
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||   |||||||||||||||||||    
T  1423240 ttatgatgtattatgtaagggccctttt-tcatattatgcctaaggctcgtaaaactctaggaacggcc 1423307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 20990724 - 20990792
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    |||| |||||||||||||| ||||| |||| |||||||||||||||||  |||||| ||||||||||||    
T  20990724 ttataatgtattatgtaagggccctatttttatattatgcctaaggcccgtaaaacgctaggaacggcc 20990792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 31473905 - 31473857
Alignment:
Q  111 gcccttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||    
T  31473905 gcccttttttcatactatgcctaaggcctgtaaaactctaggaacggcc 31473857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 160
Target Start/End: Original strand, 15060427 - 15060497
Alignment:
Q  91 ttatgatgtattatgtaagtg-cccttttttcatattatgcctaaggcctataaaactctaggaacggcct 160  Q
    |||||||||||| |||||| | ||||||| ||||||||||| ||||||| |||||||| ||||||||||||    
T  15060427 ttatgatgtattttgtaagggacccttttctcatattatgcataaggcccataaaactttaggaacggcct 15060497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 157
Target Start/End: Original strand, 21442867 - 21442933
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacgg 157  Q
    |||||||| ||||| |||| | ||||||||||||||||||||||| |  ||||||||||||||||||    
T  21442867 ttatgatgcattatataagggtccttttttcatattatgcctaagactcataaaactctaggaacgg 21442933  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 157
Target Start/End: Complemental strand, 22011935 - 22011869
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacgg 157  Q
    |||||||| ||||| |||   ||||||||| |||||||| ||||||||  |||||||||||||||||    
T  22011935 ttatgatgcattatataaagaccctttttttatattatgtctaaggcccgtaaaactctaggaacgg 22011869  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 91 - 157
Target Start/End: Complemental strand, 10993981 - 10993915
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacgg 157  Q
    |||||||| |||||||||| ||| ||||||||||||||||||||||||  |||||||||||||||||    
T  10993981 ttatgatgcattatgtaagggccattttttcatattatgcctaaggcccgtaaaactctaggaacgg 10993915  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 91 - 157
Target Start/End: Original strand, 15761143 - 15761209
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacgg 157  Q
    |||||||| |||||||||| |||||||||||||||||||| ||||| || |||||||||||||||||    
T  15761143 ttatgatgcattatgtaagggcccttttttcatattatgcttaaggtctgtaaaactctaggaacgg 15761209  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 1418258 - 1418210
Alignment:
Q  111 gcccttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1418258 gcccttttttcatattatgcctaaggcctgtaaaactctaggaacggcc 1418210  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 91 - 157
Target Start/End: Original strand, 25071927 - 25071992
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacgg 157  Q
    |||||||| |||||||||| | ||||||||||||||||||||||||||  |||||||||||||||||    
T  25071927 ttatgatgcattatgtaag-gaccttttttcatattatgcctaaggcccgtaaaactctaggaacgg 25071992  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 91 - 156
Target Start/End: Complemental strand, 33100251 - 33100186
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacg 156  Q
    |||| ||||||||||||||  ||||||| |||||||||||||||| ||| ||||||||||||||||    
T  33100251 ttataatgtattatgtaaggccccttttctcatattatgcctaagacctgtaaaactctaggaacg 33100186  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 1425062 - 1425110
Alignment:
Q  111 gcccttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  1425062 gccctttattcatatcatgcctaaggcctataaaactctaggaacggcc 1425110  T

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Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 22918436 - 22918484
Alignment:
Q  111 gcccttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||    
T  22918436 gcccttttttcatactatgcctaaggcctgtaaaactctaggaacggcc 22918484  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 111 - 158
Target Start/End: Original strand, 30378909 - 30378956
Alignment:
Q  111 gcccttttttcatattatgcctaaggcctataaaactctaggaacggc 158  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||    
T  30378909 gcccttttttcatactatgcctaaggcctgtaaaactctaggaacggc 30378956  T

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Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 157
Target Start/End: Original strand, 19157378 - 19157444
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacgg 157  Q
    |||||||| |||||||||| |||||||||||||||||| | |||||||  || ||||||||||||||    
T  19157378 ttatgatgcattatgtaagggcccttttttcatattatacttaaggcccgtagaactctaggaacgg 19157444  T

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Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 111 - 157
Target Start/End: Complemental strand, 27941315 - 27941269
Alignment:
Q  111 gcccttttttcatattatgcctaaggcctataaaactctaggaacgg 157  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||    
T  27941315 gcccttttttcatattatgcctaaggcccgtaaaactctaggaacgg 27941269  T

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Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 11830198 - 11830150
Alignment:
Q  111 gcccttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    |||||||| ||||||||||||||||| || |||||||||||||||||||    
T  11830198 gcccttttctcatattatgcctaaggtctgtaaaactctaggaacggcc 11830150  T

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Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 36641829 - 36641877
Alignment:
Q  111 gcccttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    |||||||||||||| |||||||||||||  |||||||||||||||||||    
T  36641829 gcccttttttcatactatgcctaaggcccgtaaaactctaggaacggcc 36641877  T

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Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 155
Target Start/End: Original strand, 40145761 - 40145824
Alignment:
Q  91 ttatgatgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaac 155  Q
    ||||||||||||||||| | ||| |||| |||||||||||||||| ||| |||||||||||||||    
T  40145761 ttatgatgtattatgtagg-gccattttctcatattatgcctaagacctgtaaaactctaggaac 40145824  T

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Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 159
Target Start/End: Original strand, 52448432 - 52448495
Alignment:
Q  96 atgtattatgtaagtgcccttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    |||||||||||||| ||||| |||| |||||||||||||||||  ||| || ||||||||||||    
T  52448432 atgtattatgtaagggccctatttttatattatgcctaaggcccgtaatacgctaggaacggcc 52448495  T

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Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 6024250 - 6024181
Alignment:
Q  91 ttatgatgtattatgtaagtgccc-ttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    ||||||| ||||||||||| |||| |||||||| | |||||||||||||  |||||| ||||||||||||    
T  6024250 ttatgatatattatgtaagggcccattttttcaaactatgcctaaggcccttaaaacgctaggaacggcc 6024181  T

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Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 147
Target Start/End: Complemental strand, 16876692 - 16876635
Alignment:
Q  91 ttatgatgtattatgtaagtg-cccttttttcatattatgcctaaggcctataaaact 147  Q
    ||||||||||||||||| | | ||||||| |||||||||||||||||||| |||||||    
T  16876692 ttatgatgtattatgtatggggcccttttctcatattatgcctaaggcctgtaaaact 16876635  T

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Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 159
Target Start/End: Complemental strand, 30190325 - 30190263
Alignment:
Q  98 gtattatgtaagtgccctttt-ttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    ||||||| |||| | |||||| |||||||||| | ||||||||| ||||||||||||||||||    
T  30190325 gtattatataagggaccttttattcatattatacttaaggcctaaaaaactctaggaacggcc 30190263  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 31884454 - 31884385
Alignment:
Q  91 ttatgatgtattatgtaagtgccc-ttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    ||||||||||||||||||| |||| |||||||| | |||| ||||||||  | |||| ||||||||||||    
T  31884454 ttatgatgtattatgtaagggcccattttttcaaactatgtctaaggccccttaaacgctaggaacggcc 31884385  T

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Target: scaffold0311 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 159
Target Start/End: Complemental strand, 4620 - 4573
Alignment:
Q  112 cccttttttcatattatgcctaaggcctataaaactctaggaacggcc 159  Q
    ||||||||||||| |||||||||||||  |||||||||||||||||||    
T  4620 cccttttttcatactatgcctaaggcccgtaaaactctaggaacggcc 4573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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