View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19563_low_6 (Length: 514)
Name: NF19563_low_6
Description: NF19563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19563_low_6 |
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| [»] scaffold0085 (1 HSPs) |
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Alignment Details
Target: scaffold0085 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: scaffold0085
Description:
Target: scaffold0085; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 11 - 498
Target Start/End: Original strand, 52387 - 52874
Alignment:
| Q |
11 |
cataggcgactaaagcttgaaggaaaagcatttaagaaaacagtcccgaggctctttcggtaattgaccattttggatcatatcattggtttgcaacagt |
110 |
Q |
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| T |
52387 |
cataggcgactaaagcttgaaggaaaagcatttaagaaaacagtcccgaggctctttcggtaattgaccattttggatcatatcattggtttgcaacagt |
52486 |
T |
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| Q |
111 |
gacttgcatatagcaaaagtttttgatccggatgtccagcttatcaaattaactggaatgagannnnnnncttctttctttctagtcgtgtcaaatatca |
210 |
Q |
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| T |
52487 |
gacttgcatatagcaaaagtttttgatccggatgtccagcttatcaaattaattggaatgaaatttttttcttctttctttctagtcgtgtcaaatatca |
52586 |
T |
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| Q |
211 |
aaattcaattcttttactatattataatctactatcttttccttcatcaactagtaaccctagaaagttcttacaaacaacaaattcgagtatacactga |
310 |
Q |
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| T |
52587 |
aaattcaattcttttactgtattataatctactatcttttccttcatcaactagtaaccctagaaagttcttccaaacaacaaattcgagtatacactga |
52686 |
T |
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| Q |
311 |
catattttatattttatgttgaacttcgcgatttgctgtttttcaatggaagatcattgtgcaaggattcaaaagaatgcttcctgatatttataataac |
410 |
Q |
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| T |
52687 |
catattttatattttatgttgaacttcgcgatttgctgttttttaatggaagatcattgtgcaaggattcaaaggaatgcttcctgatatttataataat |
52786 |
T |
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| Q |
411 |
attatatagaatacataaaaggaagtaatttgtccgagttttgcttctaaagtagttagatggatgctactaatttatggcttgaatc |
498 |
Q |
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| T |
52787 |
attatatataatacataaaaggaagtaatttgtctgagttttgcttctaaagtagtttgatggatgctactaatttatggcttgaatc |
52874 |
T |
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Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 349 - 411
Target Start/End: Complemental strand, 52171440 - 52171378
Alignment:
| Q |
349 |
tttttcaatggaagatcattgtgcaaggattcaaaagaatgcttcctgatatttataataaca |
411 |
Q |
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| T |
52171440 |
tttttcaatggaagatcgttgtgcaaggattcaaaggaatgcttccttatatttataataaca |
52171378 |
T |
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