View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19563_low_65 (Length: 225)

Name: NF19563_low_65
Description: NF19563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19563_low_65
NF19563_low_65
[»] chr6 (6 HSPs)
chr6 (11-107)||(17066986-17067082)
chr6 (37-112)||(16870454-16870529)
chr6 (37-107)||(16558631-16558701)
chr6 (39-113)||(16984995-16985066)
chr6 (37-112)||(16655604-16655679)
chr6 (37-78)||(16784821-16784862)
[»] scaffold0133 (1 HSPs)
scaffold0133 (52-106)||(6069-6120)
[»] chr3 (1 HSPs)
chr3 (24-80)||(7055838-7055894)


Alignment Details
Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 11 - 107
Target Start/End: Original strand, 17066986 - 17067082
Alignment:
Q  11 ggcggtgccagaattgcttccccgtattccatgctgatttgatattctcagcacacattgttcaatataataagtctaaaatcacaccatataattt 107  Q
    |||||||| ||||| ||||||||  ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||  |||||||||    
T  17066986 ggcggtgcaagaatcgcttcccccaattccatgctgatttaatattctctgcacacattgttcaatataataagtctaaaatcacagtatataattt 17067082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 37 - 112
Target Start/End: Complemental strand, 16870529 - 16870454
Alignment:
Q  37 ttccatgctgatttgatattctcagcacacattgttcaatataataagtctaaaatcacaccatataatttgatat 112  Q
    |||||||||||| ||||||| || |||||||||||||||||||||||||||| ||||||||||| |||||| ||||    
T  16870529 ttccatgctgatatgatattatctgcacacattgttcaatataataagtctataatcacaccatctaattttatat 16870454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 16558701 - 16558631
Alignment:
Q  37 ttccatgctgatttgatattctcagcacacattgttcaatataataagtctaaaatcacaccatataattt 107  Q
    |||||||||||| ||||||| || |||||||||||||||||||||||||||| ||||||||||| ||||||    
T  16558701 ttccatgctgatatgatattatctgcacacattgttcaatataataagtctataatcacaccatctaattt 16558631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 39 - 113
Target Start/End: Original strand, 16984995 - 16985066
Alignment:
Q  39 ccatgctgatttgatattctcagcacacattgttcaatataataagtctaaaatcacaccatataatttgatata 113  Q
    |||||||||| |||||||||| ||||| ||||||||||||||   ||||||||||||||||||||||||||||||    
T  16984995 ccatgctgatatgatattctctgcacatattgttcaatataa---gtctaaaatcacaccatataatttgatata 16985066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 37 - 112
Target Start/End: Original strand, 16655604 - 16655679
Alignment:
Q  37 ttccatgctgatttgatattctcagcacacattgttcaatataataagtctaaaatcacaccatataatttgatat 112  Q
    ||||||||||||  |||||| || |||||||||||||||||||||||||||| ||||||||||| | |||||||||    
T  16655604 ttccatgctgataagatattatctgcacacattgttcaatataataagtctataatcacaccatctgatttgatat 16655679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 78
Target Start/End: Original strand, 16784821 - 16784862
Alignment:
Q  37 ttccatgctgatttgatattctcagcacacattgttcaatat 78  Q
    ||||||||||||||||||||||| |||||||||||| |||||    
T  16784821 ttccatgctgatttgatattctctgcacacattgtttaatat 16784862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 6069 - 6120
Alignment:
Q  52 atattctcagcacacattgttcaatataataagtctaaaatcacaccatataatt 106  Q
    |||||||| ||||||||||||||||||||   |||||||||||||||||||||||    
T  6069 atattctctgcacacattgttcaatataa---gtctaaaatcacaccatataatt 6120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 7055894 - 7055838
Alignment:
Q  24 ttgcttccccgtattccatgctgatttgatattctcagcacacattgttcaatataa 80  Q
    ||||||||| ||||| ||||||||| |||||||||| |||| |||||||||||||||    
T  7055894 ttgcttccctgtattgcatgctgatatgatattctctgcacccattgttcaatataa 7055838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University