View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19563_low_67 (Length: 222)

Name: NF19563_low_67
Description: NF19563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19563_low_67
NF19563_low_67
[»] chr3 (16 HSPs)
chr3 (20-207)||(28035606-28035794)
chr3 (24-184)||(27918573-27918734)
chr3 (24-205)||(28053655-28053837)
chr3 (24-205)||(28064080-28064262)
chr3 (24-180)||(28183972-28184129)
chr3 (24-207)||(28481392-28481576)
chr3 (24-180)||(28159408-28159565)
chr3 (24-152)||(28132184-28132312)
chr3 (27-177)||(28510567-28510718)
chr3 (24-152)||(28002412-28002540)
chr3 (24-177)||(28147942-28148096)
chr3 (33-133)||(27460947-27461047)
chr3 (33-152)||(27975586-27975705)
chr3 (24-177)||(28081951-28082105)
chr3 (24-180)||(11418936-11419093)
chr3 (102-134)||(26627747-26627779)
[»] scaffold0257 (1 HSPs)
scaffold0257 (24-184)||(17530-17691)
[»] chr7 (1 HSPs)
chr7 (51-177)||(8693252-8693379)
[»] chr2 (1 HSPs)
chr2 (76-152)||(8019995-8020071)


Alignment Details
Target: chr3 (Bit Score: 169; Significance: 8e-91; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 20 - 207
Target Start/End: Complemental strand, 28035794 - 28035606
Alignment:
Q  20 ctgcatgaaacggtgttttacagtttgaaaatgaattctctggacatgactgagccttggtagattttcaaacactacaaattttagatttggaatctcc 119  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28035794 ctgcatgaaacgttgttttacagtttgaaaatgaattctctggacatgactgagtcttggtagattttcaaacactacaaattttagatttggaatctcc 28035695  T
Q  120 actttctgatcatcaccttcacttgcaatta-ttcttccatcttatctgcttctcttatcattagagcttctaacttgggaagctcttt 207  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28035694 actttctgatcatcaccttcacttgcaaatatttcttccatcttatctgcttctcttatcattagagcttctaacttgggaagctcttt 28035606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 24 - 184
Target Start/End: Complemental strand, 27918734 - 27918573
Alignment:
Q  24 atgaaacggtgttttacagtttgaaaatgaattctctggacatgactgagccttggtagattttcaaacactacaaattttagatttggaatctccactt 123  Q
    |||||||| ||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||| |||| | ||| ||||||||||||||||||||    
T  27918734 atgaaacgatgttttacagtttgaaaatgaattccctggacatcactgaggcttggtagattttcaaatactagatattctagatttggaatctccactt 27918635  T
Q  124 tctgatcatcaccttcacttgcaatta-ttcttccatcttatctgcttctcttatcattaga 184  Q
    ||||||||||||||||| |||||| || ||| |||| || ||||||||||||||||| ||||    
T  27918634 tctgatcatcaccttcatttgcaaatatttcatccagctcatctgcttctcttatcactaga 27918573  T

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Target: chr3; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 24 - 205
Target Start/End: Complemental strand, 28053837 - 28053655
Alignment:
Q  24 atgaaacggtgttttacagtttgaaaatgaattctctggacatgactgagccttggtagattttcaaacactacaaattttagatttggaatctccactt 123  Q
    |||||||| |||||||||| |||||| ||||||| |||| |||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  28053837 atgaaacgatgttttacagcttgaaattgaattccctggtcatgactgaggcttggtagattttcaaatactacaagttttagatttggaatctccactt 28053738  T
Q  124 tctgatcatcaccttcacttgcaatta-ttcttccatcttatctgcttctcttatcattagagcttctaacttgggaagctct 205  Q
    | |||||||||| ||||||| ||| || ||| || | || ||||||||||||||||| ||||||  |||| | ||||||||||    
T  28053737 tgtgatcatcactttcacttacaaatatttcctctagctcatctgcttctcttatcactagagccactaaatggggaagctct 28053655  T

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Target: chr3; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 24 - 205
Target Start/End: Complemental strand, 28064262 - 28064080
Alignment:
Q  24 atgaaacggtgttttacagtttgaaaatgaattctctggacatgactgagccttggtagattttcaaacactacaaattttagatttggaatctccactt 123  Q
    |||||||| |||||||||| |||||| ||||||| |||| |||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  28064262 atgaaacgatgttttacagcttgaaattgaattccctggtcatgactgaggcttggtagattttcaaatactacaagttttagatttggaatctccactt 28064163  T
Q  124 tctgatcatcaccttcacttgcaatta-ttcttccatcttatctgcttctcttatcattagagcttctaacttgggaagctct 205  Q
    | |||||||||| ||||||| ||| || ||| || | || ||||||||||||||||| ||||||  |||| | ||||||||||    
T  28064162 tgtgatcatcactttcacttacaaatatttcctctagctcatctgcttctcttatcactagagccactaaatggggaagctct 28064080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 24 - 180
Target Start/End: Complemental strand, 28184129 - 28183972
Alignment:
Q  24 atgaaacggtgttttacagtttgaaaatgaattctctggacatgactgagccttggtagattttcaaacactacaaattttagatttggaatctccactt 123  Q
    |||||||| | |||||||| |||||| |||||||||||| |||||||||| ||||||||||||||||| |||||| ||| ||||||||||||||||||||    
T  28184129 atgaaacgattttttacagcttgaaattgaattctctgggcatgactgaggcttggtagattttcaaatactacacattctagatttggaatctccactt 28184030  T
Q  124 tctgatcatcaccttcacttgcaatta-ttcttccatcttatctgcttctcttatcat 180  Q
    | |||||||||||||||||| ||| || ||| |||| || ||||||||||||||||||    
T  28184029 tgtgatcatcaccttcacttacaaatatttcctccagctcatctgcttctcttatcat 28183972  T

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Target: chr3; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 24 - 207
Target Start/End: Original strand, 28481392 - 28481576
Alignment:
Q  24 atgaaacggtgttttacagtttgaaaatgaattctctggacatgactgagccttggtagattttcaaacactacaaattttagatttggaatctccactt 123  Q
    |||||||| |||||||||| |||||| ||||||| |||  |||||| ||| ||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  28481392 atgaaacgatgttttacagcttgaaattgaattccctgatcatgacagaggcttggtagattttcaaatactacaaattttagatttggaatctcgactt 28481491  T
Q  124 tctgatcatcaccttcacttgcaattatt-cttccatcttatctgcttctcttatcattagagcttctaacttgggaagctcttt 207  Q
    | |||||||||||||||||| ||| |||| | || | ||  |||||||||||||| || ||| | | || ||| |||||||||||    
T  28481492 tgtgatcatcaccttcacttccaaatatttcctcgaactcgtctgcttctcttatgatgagaacatttagctttggaagctcttt 28481576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 24 - 180
Target Start/End: Complemental strand, 28159565 - 28159408
Alignment:
Q  24 atgaaacggtgttttacagtttgaaaatgaattctctggacatgactgagccttggtagattttcaaacactacaaattttagatttggaatctccactt 123  Q
    |||||||| | |||||||| |||||| |||||||||||| ||||||||||  |||||||||||||||| |||||| ||| |||||||||||||| |||||    
T  28159565 atgaaacgattttttacagcttgaaattgaattctctgggcatgactgaggattggtagattttcaaatactacacattctagatttggaatcttcactt 28159466  T
Q  124 tctgatcatcaccttcacttgcaatta-ttcttccatcttatctgcttctcttatcat 180  Q
    ||||||||||||||||| || ||| || ||| || | || ||||| ||||||||||||    
T  28159465 tctgatcatcaccttcaattacaaatatttcctctagctcatctgattctcttatcat 28159408  T

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Target: chr3; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 24 - 152
Target Start/End: Complemental strand, 28132312 - 28132184
Alignment:
Q  24 atgaaacggtgttttacagtttgaaaatgaattctctggacatgactgagccttggtagattttcaaacactacaaattttagatttggaatctccactt 123  Q
    |||||||| |||||||||  |||||| ||||||| |||| ||||| |||| ||||||||||||||||| | ||||| ||| |||||||||||||||||||    
T  28132312 atgaaacgatgttttacatcttgaaattgaattccctgggcatgattgaggcttggtagattttcaaatattacaactttcagatttggaatctccactt 28132213  T
Q  124 tctgatcatcaccttcacttgcaattatt 152  Q
    | |||||||||||||||||| ||| ||||    
T  28132212 tgtgatcatcaccttcacttacaaatatt 28132184  T

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Target: chr3; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 27 - 177
Target Start/End: Original strand, 28510567 - 28510718
Alignment:
Q  27 aaacggtgttttacagtttgaaaatgaattctctggacatgactgagccttggtagattttcaaacactacaaattttagatttggaatctccactttct 126  Q
    ||||| |||||||||| |||||| ||||||| |||  |||||  ||| ||||||||||||||||| | ||||| |||||||||||||||||||||||| |    
T  28510567 aaacgatgttttacagcttgaaattgaattccctgagcatgatagaggcttggtagattttcaaatattacaagttttagatttggaatctccactttgt 28510666  T
Q  127 gatcatcaccttcacttgcaatta-ttcttccatcttatctgcttctcttat 177  Q
    ||||||||||||||||| ||| || ||| || | || |||||||||||||||    
T  28510667 gatcatcaccttcacttacaaatatttcctctaactcatctgcttctcttat 28510718  T

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Target: chr3; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 24 - 152
Target Start/End: Complemental strand, 28002540 - 28002412
Alignment:
Q  24 atgaaacggtgttttacagtttgaaaatgaattctctggacatgactgagccttggtagattttcaaacactacaaattttagatttggaatctccactt 123  Q
    |||| ||| |||||||||| || ||| ||||||| |||  |||||| ||| ||| ||||||||||||| |||||||||||||||||||||||||| ||||    
T  28002540 atgagacgatgttttacagcttcaaattgaattccctgatcatgacagaggcttcgtagattttcaaatactacaaattttagatttggaatctcgactt 28002441  T
Q  124 tctgatcatcaccttcacttgcaattatt 152  Q
    | |||||||||||||||||| ||| ||||    
T  28002440 tgtgatcatcaccttcacttccaaatatt 28002412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 24 - 177
Target Start/End: Complemental strand, 28148096 - 28147942
Alignment:
Q  24 atgaaacggtgttttacagtttgaaaatgaattctctggacatgactgagccttggtagattttcaaacactacaaattttagatttggaatctccactt 123  Q
    |||||||| |||||||||  |||||| ||||||| |||  |||||  ||| ||||||||||||||||| | ||||| |||||||||||||||||||||||    
T  28148096 atgaaacgatgttttacaacttgaaattgaattccctgagcatgatagaggcttggtagattttcaaatattacaagttttagatttggaatctccactt 28147997  T
Q  124 tctgatcatcaccttcacttgcaatta-ttcttccatcttatctgcttctcttat 177  Q
    | |||||||||  ||||||| ||| || ||| || | || |||||||||||||||    
T  28147996 tgtgatcatcaaattcacttacaaatatttcctctaactcatctgcttctcttat 28147942  T

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Target: chr3; HSP #12
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 33 - 133
Target Start/End: Original strand, 27460947 - 27461047
Alignment:
Q  33 tgttttacagtttgaaaatgaattctctggacatgactgagccttggtagattttcaaacactacaaattttagatttggaatctccactttctgatcat 132  Q
    |||||||||| ||| |  ||||||| ||||||||||| ||| |||||||||||| |||| ||||||| |||||||||||||||||||| |||||||||||    
T  27460947 tgttttacagcttggagttgaattccctggacatgacagaggcttggtagatttacaaatactacaagttttagatttggaatctccagtttctgatcat 27461046  T
Q  133 c 133  Q
    |    
T  27461047 c 27461047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 33 - 152
Target Start/End: Complemental strand, 27975705 - 27975586
Alignment:
Q  33 tgttttacagtttgaaaatgaattctctggacatgactgagccttggtagattttcaaacactacaaattttagatttggaatctccactttctgatcat 132  Q
    |||||||||| |||||| |||||||  ||| |||||  ||| ||||||||||||||||| | ||||| | | |||||||||||||||||||| |||||||    
T  27975705 tgttttacagcttgaaattgaattccttggtcatgatggaggcttggtagattttcaaatattacaactatcagatttggaatctccactttgtgatcat 27975606  T
Q  133 caccttcacttgcaattatt 152  Q
    ||||||||||| ||| ||||    
T  27975605 caccttcacttacaaatatt 27975586  T

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Target: chr3; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 177
Target Start/End: Complemental strand, 28082105 - 28081951
Alignment:
Q  24 atgaaacggtgttttacagtttgaaaatgaattctctggacatgactgagccttggtagattttcaaacactacaaattttagatttggaatctccactt 123  Q
    |||||||| | | |||||| || ||| |||||||  ||| |||||| ||| ||||| ||||||||||| |||||||||  ||||| ||||||||||||||    
T  28082105 atgaaacgatatgttacagcttcaaattgaattccttgggcatgacagaggcttggaagattttcaaatactacaaatcgtagatatggaatctccactt 28082006  T
Q  124 tctgatcatcaccttcacttgcaatta-ttcttccatcttatctgcttctcttat 177  Q
    | |||||||||||||| ||| ||| || ||| || | || |||||||||||||||    
T  28082005 tgtgatcatcaccttcgcttacaaatatttcctctaactcatctgcttctcttat 28081951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 180
Target Start/End: Complemental strand, 11419093 - 11418936
Alignment:
Q  24 atgaaacggtgttttacagtttgaaaatgaattctctggacatgactgagccttggtagattttcaaacactacaaattttagatttggaatctccactt 123  Q
    |||||||| | |||||||| |||| | ||||||||||||  ||  | ||  ||||| ||||||||||| |||| |||||| ||||| ||||||||   ||    
T  11419093 atgaaacgatattttacagcttgatattgaattctctgggtatcccagaaacttggcagattttcaaatactaaaaatttaagattcggaatctcgcttt 11418994  T
Q  124 tctgatcatcaccttcacttgcaatta-ttcttccatcttatctgcttctcttatcat 180  Q
    |||||| |||| |||||||| ||| || ||| || | || |||||| |||||||||||    
T  11418993 tctgatgatcatcttcacttacaaatatttcctctagctcatctgcgtctcttatcat 11418936  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 134
Target Start/End: Complemental strand, 26627779 - 26627747
Alignment:
Q  102 tttagatttggaatctccactttctgatcatca 134  Q
    ||||||||||||||||| |||||||||||||||    
T  26627779 tttagatttggaatctcgactttctgatcatca 26627747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 24 - 184
Target Start/End: Complemental strand, 17691 - 17530
Alignment:
Q  24 atgaaacggtgttttacagtttgaaaatgaattctctggacatgactgagccttggtagattttcaaacactacaaattttagatttggaatctccactt 123  Q
    |||||||||| |||||||| |||||| ||||||| |||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||    
T  17691 atgaaacggtattttacagcttgaaattgaattccctgggcatgactgagtcttggtagattttcaaatactacaaattttagatttggaatctccattt 17592  T
Q  124 tctgatcatcaccttcacttgca-attattcttccatcttatctgcttctcttatcattaga 184  Q
    | ||||||||||||||||||||| ||  ||| || | || ||||||||||||||||| ||||    
T  17591 tgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctcttatcactaga 17530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 51 - 177
Target Start/End: Original strand, 8693252 - 8693379
Alignment:
Q  51 tgaattctctggacatgactgagccttggtagattttcaaacactacaaattttagatttggaatctccactttctgatcatcaccttcacttgcaatta 150  Q
    |||||||  ||| |||||| ||| ||||| ||||||||||| |||||| ||| ||||||||||||||| ||||||| ||||  |||||||||||||| ||    
T  8693252 tgaattccttgggcatgacagaggcttggaagattttcaaatactacatattctagatttggaatctcgactttctcatcacgaccttcacttgcaaata 8693351  T
Q  151 -ttcttccatcttatctgcttctcttat 177  Q
     ||| |||| || |||||||||||||||    
T  8693352 tttcatccagctcatctgcttctcttat 8693379  T

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Target: chr2 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 76 - 152
Target Start/End: Complemental strand, 8020071 - 8019995
Alignment:
Q  76 ttggtagattttcaaacactacaaattttagatttggaatctccactttctgatcatcaccttcacttgcaattatt 152  Q
    |||||||||||||||| | ||||| ||| |||||||||||||||||||| |||||||||||||||||| ||| ||||    
T  8020071 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatt 8019995  T

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