View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19563_low_7 (Length: 503)
Name: NF19563_low_7
Description: NF19563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19563_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 19 - 493
Target Start/End: Complemental strand, 17900072 - 17899597
Alignment:
| Q |
19 |
agagctgagtctgaaatgcaaaaaagctcacagaaagtgtataattgaatgtgtatggtatataatttcaatagttgcatattactccattatacattgg |
118 |
Q |
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| T |
17900072 |
agagctgagtctgaaatgcaaaaaagctcacagaaagtgtataattgaatgtgtatggtatataatttcaatagttgtatattactccattatacattgg |
17899973 |
T |
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| Q |
119 |
aatatgttctttgctatttctcttcccgcgagctcagggaaatgagatgcgtagcacctactgttt-atacataagttatttccgaatcacatcaatagt |
217 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
17899972 |
aatatgttctttgctatttctcttcccgcgagctcggggaaatgagatgcgtagcacctaccgttttatacataagttatttccgaatcacatcaatagt |
17899873 |
T |
|
| Q |
218 |
tataaatgatgtattttatgtaggatcggcaaacattgtttacattttgatgaaagaaatggaaaccacaactacaacaacacatttgatttgcatacac |
317 |
Q |
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| T |
17899872 |
tataaatgatgtattttatgtaggatcggcaaacgttgttcacattttgatgaaagaaatggaaaccacaactacaacaacacatttgatttgcatacac |
17899773 |
T |
|
| Q |
318 |
cgacagtgtaaaacttttttacaaatgcatcaatcaagtaattttatataaatatttgttgatattttataaactaagttaagatatgattcaattcgat |
417 |
Q |
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| T |
17899772 |
cgacaatgtaaaacttttttacaaatgcatcaatcaagtaattttatataaatatttgttgatattttataaactaagttaagatatgattcgattcgat |
17899673 |
T |
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| Q |
418 |
gcatatgtaaaataatactacaatgtcacaaacacaattccaattcacatgtacaaaatgtttcgaatgcattcat |
493 |
Q |
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| T |
17899672 |
gcatatgtaaaataatactacaatgtcacaaacacaattccaattcacacgtacaaaatgtttcgaatgcattcat |
17899597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 340
Target Start/End: Original strand, 35836547 - 35836575
Alignment:
| Q |
312 |
atacaccgacagtgtaaaacttttttaca |
340 |
Q |
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| T |
35836547 |
atacaccgacagtgtaaaacttttttaca |
35836575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 340
Target Start/End: Original strand, 35893264 - 35893292
Alignment:
| Q |
312 |
atacaccgacagtgtaaaacttttttaca |
340 |
Q |
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| T |
35893264 |
atacaccgacagtgtaaaacttttttaca |
35893292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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