View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19563_low_8 (Length: 487)
Name: NF19563_low_8
Description: NF19563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19563_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 20 - 472
Target Start/End: Complemental strand, 45348090 - 45347638
Alignment:
| Q |
20 |
ttcagattttctctgctgggacatgattttatgcactactatgtagatcttaaaattaacattgcaaaattttcacaaagttgatttacgtgtcattttt |
119 |
Q |
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| T |
45348090 |
ttcagattttctctgctgggacataattttatgcactactatgtagatcttaaaattaacattgcaaaattttcacaaagttgatttacgtgtcattttt |
45347991 |
T |
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| Q |
120 |
taattgcaatgtgagtgtgtagttgtttgtcacatgttaactgcatattatgagaatttcatacaatgtttttgcattagctgccattctatagttccct |
219 |
Q |
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| T |
45347990 |
taattgcaatgtgagtgtgtagttgtttgtcacatgttaactgcatattatgagaatttcatacaatgtttttgcattagctgccattctatagttccct |
45347891 |
T |
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| Q |
220 |
tgaggctcaagttatttaccgacatgaaataacatcagttttaatattttctttcttccttattttcaaggctgaacaaggacatccgcagatccttctg |
319 |
Q |
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| T |
45347890 |
tgaggctcaagttatttaccgacatgaaataacatcagttttaatattttctttcttccttattttcaaggctgaacaaggacatccgcagatccttctg |
45347791 |
T |
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| Q |
320 |
aaagatggaacctctatattttctagttttgttaaagcttcatccatgtgaccatggaaggcagctaaggttgggttcggttggttgcattatcagtaaa |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45347790 |
aaagatggaacctctatattttctagttttgttaaagcttcatccatgtgaccatggaaggcagctaaggttgggttcggttggttgcattatcagtaaa |
45347691 |
T |
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| Q |
420 |
tagatgtcagacctataattttatcataacttataagttgttttggatctttt |
472 |
Q |
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| T |
45347690 |
tagatgtcagacctataattttatcataacttataagttgttttggatctttt |
45347638 |
T |
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