View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19564_high_1 (Length: 984)
Name: NF19564_high_1
Description: NF19564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19564_high_1 |
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| [»] scaffold0219 (1 HSPs) |
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Alignment Details
Target: scaffold0219 (Bit Score: 898; Significance: 0; HSPs: 1)
Name: scaffold0219
Description:
Target: scaffold0219; HSP #1
Raw Score: 898; E-Value: 0
Query Start/End: Original strand, 1 - 968
Target Start/End: Original strand, 8527 - 9493
Alignment:
| Q |
1 |
actaaaccaaaaccttatcaagaaaacatggtgaaggaaaacaaagtgtggttttatacaacacaactagcaacaagaccaaactcaaaatcatcatttc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8527 |
actaaaccaaaaccttatcaagaaaacatggtgaaggaaaacaaagtgtggttttatacaacacaactagcaacaagaccaaactcaaaatcatcatttc |
8626 |
T |
|
| Q |
101 |
aatcaataattaaatagactcgatctatttctagagtatccttctttgatgcacattggtaacaaaacctaccaaactaaatcaattatttgaaaatcaa |
200 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8627 |
aatcaataattaaatagactcggtctatttctagagtatccttctttgatgcacattggtaacaaaacctaccaaactaaatcaattatttgaaaatcaa |
8726 |
T |
|
| Q |
201 |
aattagctaatttttccgcacacgtgttaccttagcatataagtgagactccaaattgaaaccactaatgatattaacatgattcatccacctatttctt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8727 |
aattagctaatttttccgcacacgtgttaccttagcgtataagtgagactccaaattgaaaccactaatgatattaacatgattcatccacctatttctt |
8826 |
T |
|
| Q |
301 |
ggatgcaaagaaaccaaagatgagtcattgaaagcttttaacagttcaaagaggattacattctaacnnnnnnnnnnttgagatcaacctagttcataag |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||| |
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| T |
8827 |
ggatgcaaagaaaccaaagatgagtcattgaaagcttttaacagttcaaagagaattacattctaacaaaaaaaaaat-gagatcaacctagttcataag |
8925 |
T |
|
| Q |
401 |
ccttcctaataacaagaatgaaacaaaccaatccaaccctaaaagaagaagagacccctaggttcatcggcaaagttacatatagagctcaggttgttca |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8926 |
ccttcctaataacaagaatgaaacaaaccaatccaaccctaaaagaagaagagacccctaggttcatcggcaaagttacatatagagctcaggttgttca |
9025 |
T |
|
| Q |
501 |
attgaaccccttaattcttaaatttacatacaaattattatgttttcatcatgttaaatcccctcaaaattaaacattgcaccatacttgcactaaaaat |
600 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9026 |
attgaaccccttaattcttaaatttacatacaaattattatgttttcatcatgataaatcccctcaaaattaaacattgcaccatacttgcactaaaaat |
9125 |
T |
|
| Q |
601 |
cttaagaactcatagctagaatcatgggaactagtcttgtacttatgtataacaaagtcatgattcatctttggtttattgtatgtatatgcataaattc |
700 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9126 |
cttaagaactcatagctagaatcatgggaactagccttgtacttatgtataacaaagtcatgattcatctttggtttattgtatgtatatgcataaattc |
9225 |
T |
|
| Q |
701 |
atgctattctcaacaaccttacgacagttctaattgttattcaaatgaaacatcaccaggtacaaggtacacttgcaattcaacacatgacacatgcaaa |
800 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9226 |
atgctattctcaacaaccttacgacagttctaattgttattcaaatgaaacatcaccaggtacaaggtacacttgcaattcaacacatgacacatgcaaa |
9325 |
T |
|
| Q |
801 |
acattcttagtatatagagcaaatcaaaatttccaaacaatttcacaaatctcaaacctcttcaacaaaaacaccgatgagattcttcacataaacaacc |
900 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9326 |
acattcttggtatatagagcaaatcaaaatttccaaacaatttcacaaatctcaaacctcttcaacaaaaacaccgatgagattcttcacataaacaacc |
9425 |
T |
|
| Q |
901 |
tcacatcttcttctcaaatactcaaacaaggtaaagaagttcttattactattgaatgtgcatgttct |
968 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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|
| T |
9426 |
tcacatcttcttctcaaatactcaaacaaggtaaagaagttcttattcctattgaatgtacatgttct |
9493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 600 - 968
Target Start/End: Complemental strand, 21541990 - 21541619
Alignment:
| Q |
600 |
tcttaagaactcatagctagaatcatgggaactagtcttgtacttatgtataacaa---agtcatgattcatctttggtttattgtatgtatatgcataa |
696 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
21541990 |
tcttaagaactcatagctagaatcatgggaactaatcttgtacttatgtataacaacaaagtcatgattcatctttggtttatcatatgtatatgcataa |
21541891 |
T |
|
| Q |
697 |
attcatgctattctcaacaaccttacgacagttctaattgttattcaaatgaaacatcaccaggtacaaggtacacttgcaattcaacacatgacacatg |
796 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
21541890 |
attcatgctattctcaacaaccttacgacagttctaattgttattcaaatgaaacatcaccaggttcaaggtacacttgcaattcaacacatgacacatg |
21541791 |
T |
|
| Q |
797 |
caaaacattcttagtatatagagcaaatcaaaatttccaaacaatttcacaaatctcaaacctcttcaacaaaaacaccgatgagattcttcacataaac |
896 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
21541790 |
caaaacattcttagtatatagagcaaatcaaaatttccaaaccatttcacaaatctcaaacctcttcaacaaaaacaccaatgagattcttcacataaac |
21541691 |
T |
|
| Q |
897 |
aacctcacatcttcttctcaaatactcaaacaaggtaaagaagttcttattactattgaatgtgcatgttct |
968 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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|
| T |
21541690 |
aacctcacatcttcttcacaaatactcaaacaaggtaaagaagttcttattcctattgaatgtacatgttct |
21541619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 3e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 482 - 593
Target Start/End: Original strand, 19926151 - 19926263
Alignment:
| Q |
482 |
atagagctcaggttgttcaattgaacc-ccttaattcttaaatttacatacaaattattatgttttcatcatgttaaatcccctcaaaattaaacattgc |
580 |
Q |
| |
|
|||||||||||| |||||| |||||| ||| ||||||||| ||||||| |||||||||||||||| ||||||| |||||||||||| |||||||||| |
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|
| T |
19926151 |
atagagctcagggggttcaagtgaacctcctcaattcttaattttacattcaaattattatgtttttctcatgttgaatcccctcaaatataaacattgc |
19926250 |
T |
|
| Q |
581 |
accatacttgcac |
593 |
Q |
| |
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|||| |||||||| |
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| T |
19926251 |
accacacttgcac |
19926263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 513 - 596
Target Start/End: Original strand, 8784032 - 8784115
Alignment:
| Q |
513 |
aattcttaaatttacatacaaattattatgttttcatcatgttaaatcccctcaaaattaaacattgcaccatacttgcactaa |
596 |
Q |
| |
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||||| ||| |||| || |||||| ||||||||| ||||||| |||||||||||| |||||||||||||| ||||||||||| |
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|
| T |
8784032 |
aattcataattttatattcaaattgttatgtttttctcatgttgaatcccctcaaatgtaaacattgcaccacacttgcactaa |
8784115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 548 - 593
Target Start/End: Original strand, 46615609 - 46615654
Alignment:
| Q |
548 |
atcatgttaaatcccctcaaaattaaacattgcaccatacttgcac |
593 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||| |||||||| |
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|
| T |
46615609 |
atcatgttgaatcccctcaaatataaacattgcaccacacttgcac |
46615654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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