View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19564_high_10 (Length: 301)
Name: NF19564_high_10
Description: NF19564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19564_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 38885348 - 38885063
Alignment:
| Q |
1 |
cttccaacttcctcatcattctcacctgacatttcctctaaagattttccatttgcctcgggtactaagaaagtacacaagaaccccaaaatgttacaaa |
100 |
Q |
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| T |
38885348 |
cttccaacttcctcatcattctcacctgacatttcctctaaagattttccatttgcctcgggtactaagaaagtacacaagaaccccaaaatgttacaaa |
38885249 |
T |
|
| Q |
101 |
ctcccaacagaatcaatgaattcttcataccaatacctgcagggtaccctgcatctgctttactcttgtctttgttttgtgccaaatacaagaacccaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
38885248 |
ctcccaacagaatcaatgaattcttcataccaatacctgcagggtaccctgcatctgctttactcttgtctttgttttgtgccaaatacaagaacccgaa |
38885149 |
T |
|
| Q |
201 |
tgcaccaaccatagccccaagcttacccgatgcggatgatattccatggcaagttgatcggaatctagctggaaaaatctctgctg |
286 |
Q |
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| T |
38885148 |
tgcaccaaccatagccccaagcttacccgatgcggatgatattccatggcaagttgatcggaatctagctggaaaaatctctgctg |
38885063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 8 - 286
Target Start/End: Complemental strand, 38894527 - 38894249
Alignment:
| Q |
8 |
cttcctcatcattctcacctgacatttcctctaaagattttccatttgcctcgggtactaagaaagtacacaagaaccccaaaatgttacaaactcccaa |
107 |
Q |
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||||||| || |||||||||||||| ||||| ||||||||||||||||||||||| || ||||||||| | | ||| |||||||||||| || ||||| |
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| T |
38894527 |
cttcctcttcgttctcacctgacatctcctccaaagattttccatttgcctcgggcaccaagaaagtaaaaaggaatcccaaaatgttaaccacacccaa |
38894428 |
T |
|
| Q |
108 |
cagaatcaatgaattcttcataccaatacctgcagggtaccctgcatctgctttactcttgtctttgttttgtgccaaatacaagaacccaaatgcacca |
207 |
Q |
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| T |
38894427 |
gagaagcagtgaattcttcacaccaatacctgcagggtaccctgcatctgctttactcttgtccttgttctgtgccaagtacaagaacccaaacgcacca |
38894328 |
T |
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| Q |
208 |
accatagccccaagcttacccgatgcggatgatattccatggcaagttgatcggaatctagctggaaaaatctctgctg |
286 |
Q |
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||||||||||||||||| || ||||||||||||||||||||||| || || ||||||||||| |||||||| ||||||| |
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| T |
38894327 |
accatagccccaagcttcccagatgcggatgatattccatggcaggtagaacggaatctagcaggaaaaatttctgctg |
38894249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 281
Target Start/End: Original strand, 30619558 - 30619818
Alignment:
| Q |
21 |
ctcacctgacatttcctctaaagattttccatttgcctcgggtactaagaaagtacacaagaaccccaaaatgttacaaactcccaacagaatcaatgaa |
120 |
Q |
| |
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|||||| ||||||||||| | ||||||||| |||| ||| || || ||||||||| | |||| |||||||||||| ||| || |||| ||||||||| |
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| T |
30619558 |
ctcaccagacatttcctcaagagattttccctttgtctcaggcaccaagaaagtaaaacagaatcccaaaatgttaacaacacctaacaaaatcaatgag |
30619657 |
T |
|
| Q |
121 |
ttcttcataccaatacctgcagggtaccctgcatctgctttactcttgtctttgttttgtgccaaatacaagaacccaaatgcaccaaccatagccccaa |
220 |
Q |
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|| ||| ||||||||| ||||||||||||||||| ||||| | |||| || ||||||||||| || ||||| || || || ||||| || |||| |
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| T |
30619658 |
tttctcacaccaataccagcagggtaccctgcatcagctttcttgggatcttgattctgtgccaaatataaaaacccgaacgcgccgaccatcgctccaa |
30619757 |
T |
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| Q |
221 |
gcttacccgatgcggatgatattccatggcaagttgatcggaatctagctggaaaaatctc |
281 |
Q |
| |
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| || |||| ||||| |||||||| || |||||||||| || ||||| || |||||||| |
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| T |
30619758 |
gtttccccgtcgcggaggatattccgtgacaagttgatctaaacctagccgggaaaatctc |
30619818 |
T |
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