View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19564_high_5 (Length: 604)
Name: NF19564_high_5
Description: NF19564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19564_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 228 - 591
Target Start/End: Complemental strand, 3666138 - 3665789
Alignment:
| Q |
228 |
tatgggtattattttctgaaacagaaatgaaataatattnnnnnnnnccctattcagaggaatatattcttagtaactccaggaaagcatgcagtgaatg |
327 |
Q |
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| T |
3666138 |
tatgggtattattttctgaaacagaaatgaaataatattaaaaaaaaccctattcag-------------tagtaactccaggagagcatgcagtgaatg |
3666052 |
T |
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| Q |
328 |
cgccaatattttttatttcttgagaccatctaaaccgttactaaaatggtccaaaatgtaaatatggactatttggttgtggacaatttggcagaaaaat |
427 |
Q |
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| T |
3666051 |
cggcaatttcttttatttcttgagaccatctaaaccgttactaaaaag-tccaaaatgtaaacatggactatttggatgtcgacaatttggcagaaaaat |
3665953 |
T |
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| Q |
428 |
aatactannnnnnnctctatataacaaacggaaaatattttctttaaatgtttgaatcagatccttttattttcgttcagtatgttatataaaatatttg |
527 |
Q |
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| T |
3665952 |
aatactatttttttctttatataacaaacggaaaatattttctttgaatgtttgaatcagatccttttattttcgttcagtatgttatataaaatatttg |
3665853 |
T |
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| Q |
528 |
tcatttaatgagtttccatgtatgtctctcggtcaatgatcgaacattagttataaacatactg |
591 |
Q |
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| T |
3665852 |
tcatttaattagtttccatgtacgtctctcggtcaataatcgaacattatttataaacgtactg |
3665789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 10 - 194
Target Start/End: Complemental strand, 3666356 - 3666172
Alignment:
| Q |
10 |
aagaatatggattgtatttgaggctatgtagaataattctagatctttgatagttaacttgagagtcaccacagcacaaaaagcaagcaatattcccaaa |
109 |
Q |
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| T |
3666356 |
aagaatatggattgtgtttgaggctatgtagaataattctagatctttgatagttaacttgagagtcaccacagcacaaaaagcaagcaatattcccaaa |
3666257 |
T |
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| Q |
110 |
aagatcttcactttcattgacctattcctcaaccagctagaccatacattcacgggagaatccttctttgatcccattttgtgac |
194 |
Q |
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| T |
3666256 |
aagatcttcactttcattgacctattcctcaaccagctagacaatacattcacgggagaatccttctttgatcccattttgtgac |
3666172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 51 - 194
Target Start/End: Complemental strand, 3675781 - 3675638
Alignment:
| Q |
51 |
gatctttgatagttaacttgagagtcaccacagcacaaaaagcaagcaatattcccaaaaagatcttcactttcattgacctattcctcaaccagctaga |
150 |
Q |
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| T |
3675781 |
gatctctgatggtaaactttagagccaccaaagcagaaaatgcaagcaatattcccaaaaagattttcactttcattgatctcttcctcaaccatataga |
3675682 |
T |
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| Q |
151 |
ccatacattcacgggagaatccttctttgatcccattttgtgac |
194 |
Q |
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| T |
3675681 |
caaaacattcacaggggaatccctctttgatcccattttgtgac |
3675638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 75 - 191
Target Start/End: Complemental strand, 3683194 - 3683078
Alignment:
| Q |
75 |
tcaccacagcacaaaaagcaagcaatattcccaaaaagatcttcactttcattgacctattcctcaaccagctagaccatacattcacgggagaatcctt |
174 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||| | | | | |||||||| | | ||||| | |
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| T |
3683194 |
tcaccacagcacaaaaagcaagcaatattcccaacaagatcttcactttcattgacctcttactcaaccatccaatcaaaacattcactgcaaaatccct |
3683095 |
T |
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| Q |
175 |
ctttgatcccattttgt |
191 |
Q |
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| T |
3683094 |
ctttgatcccattttgt |
3683078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 82 - 189
Target Start/End: Complemental strand, 3661384 - 3661277
Alignment:
| Q |
82 |
agcacaaaaagcaagcaatattcccaaaaagatcttcactttcattgacctattcctcaaccagctagaccatacattcacgggagaatccttctttgat |
181 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||| | | || |||||||| || |||||| |||||||| |
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| T |
3661384 |
agcacaaaaagcaagcaatattcccaaaaagatcttcactttcattgatcttttcctcagccatccaaacataacattcaccggtgaatccctctttgat |
3661285 |
T |
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| Q |
182 |
cccatttt |
189 |
Q |
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|||||||| |
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| T |
3661284 |
cccatttt |
3661277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 457 - 546
Target Start/End: Complemental strand, 3675389 - 3675300
Alignment:
| Q |
457 |
ggaaaatattttctttaaatgtttgaatcagatccttttattttcgttcagtatgttatataaaatatttgtcatttaatgagtttccat |
546 |
Q |
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| T |
3675389 |
ggaaaagattttctttgaatgcttgaatcaactcctttaattttcgtttggtatgttataccaaatatttgtcatttaatgagtttccat |
3675300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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