View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19564_high_6 (Length: 592)

Name: NF19564_high_6
Description: NF19564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19564_high_6
NF19564_high_6
[»] chr1 (9 HSPs)
chr1 (1-576)||(10604633-10605219)
chr1 (464-512)||(30762018-30762066)
chr1 (447-509)||(10785093-10785155)
chr1 (447-512)||(4431062-4431127)
chr1 (447-512)||(49820543-49820608)
chr1 (450-509)||(27905821-27905880)
chr1 (462-509)||(34159045-34159092)
chr1 (447-512)||(7451890-7451955)
chr1 (471-512)||(32882774-32882815)
[»] chr4 (5 HSPs)
chr4 (447-509)||(42719543-42719605)
chr4 (450-511)||(19814847-19814908)
chr4 (446-516)||(21983500-21983569)
chr4 (447-516)||(28967262-28967330)
chr4 (455-512)||(52009220-52009277)
[»] chr3 (4 HSPs)
chr3 (23-104)||(32604288-32604369)
chr3 (461-509)||(46358014-46358062)
chr3 (447-509)||(32010174-32010236)
chr3 (447-509)||(50518721-50518783)
[»] chr6 (4 HSPs)
chr6 (455-509)||(3880244-3880298)
chr6 (447-512)||(13423749-13423814)
chr6 (464-512)||(4043346-4043394)
chr6 (447-515)||(16180483-16180550)
[»] chr8 (5 HSPs)
chr8 (447-508)||(12197708-12197769)
chr8 (447-508)||(12442136-12442197)
chr8 (469-512)||(2613176-2613219)
chr8 (452-516)||(8843739-8843802)
chr8 (456-512)||(17656365-17656421)
[»] chr7 (5 HSPs)
chr7 (451-516)||(3478739-3478804)
chr7 (447-508)||(33719352-33719413)
chr7 (447-509)||(6726051-6726113)
chr7 (447-516)||(42532884-42532953)
chr7 (447-516)||(47456699-47456767)
[»] chr5 (3 HSPs)
chr5 (447-512)||(8297857-8297922)
chr5 (456-516)||(25992397-25992457)
chr5 (447-512)||(23426687-23426752)
[»] chr2 (5 HSPs)
chr2 (447-516)||(15361111-15361179)
chr2 (455-509)||(4975140-4975194)
chr2 (455-509)||(4993048-4993102)
chr2 (447-487)||(13337637-13337677)
chr2 (447-511)||(40470777-40470840)
[»] scaffold0063 (1 HSPs)
scaffold0063 (447-491)||(58515-58559)
[»] scaffold0002 (1 HSPs)
scaffold0002 (472-512)||(426557-426597)


Alignment Details
Target: chr1 (Bit Score: 440; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 1 - 576
Target Start/End: Original strand, 10604633 - 10605219
Alignment:
Q  1 aattaaatggaggagaggaattgaagagccttactcaaggaaaccaagaaccgctagcctcaaaaagatagggagtgtcatctttggcctaatttttctg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10604633 aattaaatggaggagaggaattgaagagccttactcaaggaaaccaagaaccgctagcctcaaaaagatagggagtgtcatctttggcctaatttttctg 10604732  T
Q  101 taaaagaagatgcaacaaaacataataagttgatgatcaataaacattaaattaaaatattatagctagcatagaaaaagaatgatagaaaaggtgtact 200  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10604733 taaaagaagatgcaacaaaacagtataagttgatgatcaataaacattaaattaaaatattatagctagcatagaaaaagaatgatagaaaagatgtact 10604832  T
Q  201 tttgtttcatattttatagcatgattaatttagacaaataagtttcttttaaaataatta--ttgtccaaataatggtttttcacatgcaaaactatata 298  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  10604833 tttgtttgatattttatagcatgattaatttagacaaataagtttcttttaaaataattattttgtccaaataatggtttttcacatgcaaaactatata 10604932  T
Q  299 ttataaaacatgtgttattagttgtgtagtgaagggtttggcctccaccaactagagtctcaacatttcattggtgttttgacttactaaccctagcgaa 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||  |||    
T  10604933 ttataaaacatgtgttattagttgtgtagtgaagggtttggcctcaaccaactagagtctcaacatgtcattggtgttttgacttactaaccctaatgaa 10605032  T
Q  399 gtctcaacatgttattggtgtct-nnnnnnnntatagtgatgaggtagatattctctgtttcactggtctctattcgtcttgagcatggatctgattgtt 497  Q
    |||||||||||||||||||||||         ||||||||||||||| ||||||||||||||||  |||||||||||||||||||| |||||||||||||    
T  10605033 gtctcaacatgttattggtgtctaaaaaaaaatatagtgatgaggtatatattctctgtttcaccagtctctattcgtcttgagcagggatctgattgtt 10605132  T
Q  498 aaataaaatttgctgattc--------nnnnnnnnntgatgaggtagataagaataataaggacctttcaaggacaagggcaaaagg 576  Q
    |||||||||||||||||||                 |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10605133 aaataaaatttgctgattcaaaaaaaaaaagtatagtgatgaggtagataagaataataaggacctttcaaggacaagggcaaaagg 10605219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 464 - 512
Target Start/End: Complemental strand, 30762066 - 30762018
Alignment:
Q  464 gtctctattcgtcttgagcatggatctgattgttaaataaaatttgctg 512  Q
    |||||| ||||||||||||| |||||||||| |||||||||||||||||    
T  30762066 gtctctgttcgtcttgagcaaggatctgatttttaaataaaatttgctg 30762018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 447 - 509
Target Start/End: Complemental strand, 10785155 - 10785093
Alignment:
Q  447 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttg 509  Q
    ||||||| |||| ||  |||||||||||||||||||| ||||||| ||||||||| |||||||    
T  10785155 tattctcagttttacccgtctctattcgtcttgagcagggatctggttgttaaatgaaatttg 10785093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 447 - 512
Target Start/End: Original strand, 4431062 - 4431127
Alignment:
Q  447 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctg 512  Q
    |||||||  |||||| |||||||||||||||||||||  ||| || ||||| ||||||||||||||    
T  4431062 tattctcaatttcaccggtctctattcgtcttgagcagagatatgtttgtttaataaaatttgctg 4431127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 447 - 512
Target Start/End: Original strand, 49820543 - 49820608
Alignment:
Q  447 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctg 512  Q
    ||||||||| ||||| | |||||||  ||||||||||  |||| ||||||||||||||||||||||    
T  49820543 tattctctgattcaccgatctctatctgtcttgagcagagatcagattgttaaataaaatttgctg 49820608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 509
Target Start/End: Original strand, 27905821 - 27905880
Alignment:
Q  450 tctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttg 509  Q
    |||||| ||||| ||||||||||| ||||||||| ||||||| ||||| |||||| ||||    
T  27905821 tctctgattcaccggtctctattcttcttgagcagggatctggttgtttaataaattttg 27905880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 462 - 509
Target Start/End: Original strand, 34159045 - 34159092
Alignment:
Q  462 tggtctctattcgtcttgagcatggatctgattgttaaataaaatttg 509  Q
    ||||||||||| |||||||||| ||||||||||||| |||||| ||||    
T  34159045 tggtctctatttgtcttgagcagggatctgattgtttaataaattttg 34159092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 512
Target Start/End: Complemental strand, 7451955 - 7451890
Alignment:
Q  447 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctg 512  Q
    ||||||| ||||||| ||||||| |||||||||||||  |||||  ||||| ||||| ||||||||    
T  7451955 tattctcagtttcaccggtctctgttcgtcttgagcagagatctagttgtttaataatatttgctg 7451890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 512
Target Start/End: Original strand, 32882774 - 32882815
Alignment:
Q  471 ttcgtcttgagcatggatctgattgttaaataaaatttgctg 512  Q
    ||||||||||||| |||| |||||||| ||||||||||||||    
T  32882774 ttcgtcttgagcagggatgtgattgtttaataaaatttgctg 32882815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 447 - 509
Target Start/End: Original strand, 42719543 - 42719605
Alignment:
Q  447 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttg 509  Q
    ||||||| ||||||| ||||||||||||||||||||| |||| |||||||| |||||||||||    
T  42719543 tattctcagtttcaccggtctctattcgtcttgagcagggatttgattgtttaataaaatttg 42719605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 450 - 511
Target Start/End: Complemental strand, 19814908 - 19814847
Alignment:
Q  450 tctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgct 511  Q
    ||||||||| |  ||||||| ||||||||||||| ||||||| |||||||||||||||||||    
T  19814908 tctctgttttatcggtctctgttcgtcttgagcagggatctggttgttaaataaaatttgct 19814847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 446 - 516
Target Start/End: Complemental strand, 21983569 - 21983500
Alignment:
Q  446 atattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctgattc 516  Q
    ||||| ||| |||||  ||||||| ||||||||||||| |||||||||| || ||||||||||||||||||    
T  21983569 atattttctatttcatcggtctctgttcgtcttgagcagggatctgatt-tttaataaaatttgctgattc 21983500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 516
Target Start/End: Original strand, 28967262 - 28967330
Alignment:
Q  447 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctgattc 516  Q
    |||| |||||||||| | ||||| |||||||||||||   ||||| || |||||||||||||||||||||    
T  28967262 tattatctgtttcaccgatctctgttcgtcttgagcagaaatctggtt-ttaaataaaatttgctgattc 28967330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 455 - 512
Target Start/End: Original strand, 52009220 - 52009277
Alignment:
Q  455 gtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctg 512  Q
    ||||||| | ||||||||||||||| ||| ||||||| | ||| ||||||||||||||    
T  52009220 gtttcaccgatctctattcgtcttgggcagggatctggtagtttaataaaatttgctg 52009277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 32604288 - 32604369
Alignment:
Q  23 gaagagccttactcaaggaaaccaagaaccgctagcctcaaaaagatagggagtgtcatctttggcctaatttttctgtaaa 104  Q
    ||||||||||||||||||||||||||  || ||| |||||  ||||| ||||| ||||||||||||||  ||||||||||||    
T  32604288 gaagagccttactcaaggaaaccaagtgccactatcctcaggaagatggggagagtcatctttggccttgtttttctgtaaa 32604369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 461 - 509
Target Start/End: Complemental strand, 46358062 - 46358014
Alignment:
Q  461 ctggtctctattcgtcttgagcatggatctgattgttaaataaaatttg 509  Q
    ||||||||| ||||||||||||| ||||||| |||||||||||||||||    
T  46358062 ctggtctctgttcgtcttgagcagggatctggttgttaaataaaatttg 46358014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 447 - 509
Target Start/End: Original strand, 32010174 - 32010236
Alignment:
Q  447 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttg 509  Q
    |||||||||  |||| | ||||| ||||||||||| | ||||||| |||||||||||||||||    
T  32010174 tattctctgaatcaccgatctctgttcgtcttgagtagggatctggttgttaaataaaatttg 32010236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 447 - 509
Target Start/End: Complemental strand, 50518783 - 50518721
Alignment:
Q  447 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttg 509  Q
    ||||||| |||||||  |||||| ||||||||||||| |||||  |||||| |||||||||||    
T  50518783 tattctcagtttcaccagtctctgttcgtcttgagcagggatcaaattgtttaataaaatttg 50518721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 455 - 509
Target Start/End: Complemental strand, 3880298 - 3880244
Alignment:
Q  455 gtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttg 509  Q
    ||||||| ||||||| ||||||||||||| ||||||||||||| |||||||||||    
T  3880298 gtttcaccggtctctgttcgtcttgagcagggatctgattgtttaataaaatttg 3880244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 512
Target Start/End: Original strand, 13423749 - 13423814
Alignment:
Q  447 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctg 512  Q
    ||||||| ||||||  ||||||| ||||||||||| | ||| || || ||||||||||||||||||    
T  13423749 tattctcagtttcaaaggtctctgttcgtcttgaggagggacctaatggttaaataaaatttgctg 13423814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 464 - 512
Target Start/End: Complemental strand, 4043394 - 4043346
Alignment:
Q  464 gtctctattcgtcttgagcatggatctgattgttaaataaaatttgctg 512  Q
    |||| |||||||||||||||  ||| ||||| |||||||||||||||||    
T  4043394 gtctttattcgtcttgagcagagatttgatttttaaataaaatttgctg 4043346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 515
Target Start/End: Complemental strand, 16180550 - 16180483
Alignment:
Q  447 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctgatt 515  Q
    |||| |||||||||| | ||| | |||||||||||||  ||||||||| || |||||||||||||||||    
T  16180550 tattatctgtttcaccgatctttgttcgtcttgagcagagatctgatt-tttaataaaatttgctgatt 16180483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 447 - 508
Target Start/End: Complemental strand, 12197769 - 12197708
Alignment:
Q  447 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaattt 508  Q
    ||||||||| ||||| | |||||||||||||||||||| |||||  ||||||||||||||||    
T  12197769 tattctctgattcaccgatctctattcgtcttgagcatagatctcgttgttaaataaaattt 12197708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 447 - 508
Target Start/End: Complemental strand, 12442197 - 12442136
Alignment:
Q  447 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaattt 508  Q
    ||||||||| ||||| | |||||||||||||||||||| |||||  ||||||||||||||||    
T  12442197 tattctctgattcaccgatctctattcgtcttgagcatagatctcgttgttaaataaaattt 12442136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 469 - 512
Target Start/End: Complemental strand, 2613219 - 2613176
Alignment:
Q  469 tattcgtcttgagcatggatctgattgttaaataaaatttgctg 512  Q
    ||||||||||||| | ||||||||||||||||||||||||||||    
T  2613219 tattcgtcttgagtagggatctgattgttaaataaaatttgctg 2613176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 452 - 516
Target Start/End: Complemental strand, 8843802 - 8843739
Alignment:
Q  452 tctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctgattc 516  Q
    |||||||||| ||||||| ||||||||||| | |||| ||||| || ||||||||||||||||||    
T  8843802 tctgtttcaccggtctctgttcgtcttgagaagggatttgatt-tttaataaaatttgctgattc 8843739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 456 - 512
Target Start/End: Complemental strand, 17656421 - 17656365
Alignment:
Q  456 tttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctg 512  Q
    |||||| ||||||||||  || |||||| ||| ||||||||| ||||||||||||||    
T  17656421 tttcaccggtctctattgctcatgagcagggacctgattgtttaataaaatttgctg 17656365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 451 - 516
Target Start/End: Original strand, 3478739 - 3478804
Alignment:
Q  451 ctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctgattc 516  Q
    |||| |||||| ||||||| || ||||||| || ||||||| ||||||||||||||||||||||||    
T  3478739 ctctctttcaccggtctctgtttgtcttgatcagggatctggttgttaaataaaatttgctgattc 3478804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 447 - 508
Target Start/End: Original strand, 33719352 - 33719413
Alignment:
Q  447 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaattt 508  Q
    ||||||| ||||||| | ||||| ||||||||||||| ||||||| ||||| ||||||||||    
T  33719352 tattctcagtttcaccgatctctgttcgtcttgagcagggatctggttgtttaataaaattt 33719413  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 447 - 509
Target Start/End: Complemental strand, 6726113 - 6726051
Alignment:
Q  447 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttg 509  Q
    ||||||| ||||||| | ||||| |||||||||||||  |||||| ||||| |||||||||||    
T  6726113 tattctcagtttcaccgatctctgttcgtcttgagcagagatctggttgtttaataaaatttg 6726051  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 516
Target Start/End: Complemental strand, 42532953 - 42532884
Alignment:
Q  447 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctgattc 516  Q
    ||||||| ||| ||| ||||||| ||||||||||||| |||| || ||||  |||||||||| |||||||    
T  42532953 tattctcagttccaccggtctctgttcgtcttgagcagggatttggttgtctaataaaatttactgattc 42532884  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 516
Target Start/End: Complemental strand, 47456767 - 47456699
Alignment:
Q  447 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctgattc 516  Q
    |||| |||||||||| ||||||| |||||||||||||  |||||| || || ||||||||||| ||||||    
T  47456767 tattttctgtttcaccggtctctgttcgtcttgagcagagatctggtt-tttaataaaatttgttgattc 47456699  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 447 - 512
Target Start/End: Original strand, 8297857 - 8297922
Alignment:
Q  447 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctg 512  Q
    ||||||| ||||||| ||||||| ||||||||||| |  |||||||||||| ||||||||||||||    
T  8297857 tattctcagtttcaccggtctctgttcgtcttgagtagagatctgattgttcaataaaatttgctg 8297922  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 456 - 516
Target Start/End: Original strand, 25992397 - 25992457
Alignment:
Q  456 tttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctgattc 516  Q
    |||||| ||||||| |||||||||||||  |||||| ||||| ||||| ||||||||||||    
T  25992397 tttcaccggtctctgttcgtcttgagcagagatctggttgtttaataatatttgctgattc 25992457  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 512
Target Start/End: Original strand, 23426687 - 23426752
Alignment:
Q  447 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctg 512  Q
    |||||||||  |||| ||||||| ||| |||||||||   |||||||| |||||||||||||||||    
T  23426687 tattctctgaatcaccggtctctgttcctcttgagcagcaatctgatttttaaataaaatttgctg 23426752  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 447 - 516
Target Start/End: Original strand, 15361111 - 15361179
Alignment:
Q  447 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctgattc 516  Q
    |||| ||||||||||  |||||||||||||||||||| |||| ||||| || ||||||||||| ||||||    
T  15361111 tattatctgtttcaccagtctctattcgtcttgagcagggatttgatt-tttaataaaatttgttgattc 15361179  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 455 - 509
Target Start/End: Original strand, 4975140 - 4975194
Alignment:
Q  455 gtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttg 509  Q
    |||||||| |||||| |||||||||||||  || ||||| |||||||||||||||    
T  4975140 gtttcactagtctctgttcgtcttgagcagagacctgatggttaaataaaatttg 4975194  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 455 - 509
Target Start/End: Original strand, 4993048 - 4993102
Alignment:
Q  455 gtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttg 509  Q
    |||||||| |||||| |||||||||||||  || ||||| |||||||||||||||    
T  4993048 gtttcactagtctctgttcgtcttgagcagagacctgatggttaaataaaatttg 4993102  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 487
Target Start/End: Original strand, 13337637 - 13337677
Alignment:
Q  447 tattctctgtttcactggtctctattcgtcttgagcatgga 487  Q
    ||||||||||||||| ||||||| ||||||||||| |||||    
T  13337637 tattctctgtttcaccggtctctgttcgtcttgagtatgga 13337677  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 511
Target Start/End: Original strand, 40470777 - 40470840
Alignment:
Q  447 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgct 511  Q
    |||||||||||  |||| ||||| ||||||||||||| | |||||||| || |||||||||||||    
T  40470777 tattctctgttaaactgatctctgttcgtcttgagcaagaatctgatt-tttaataaaatttgct 40470840  T

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Target: scaffold0063 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 491
Target Start/End: Original strand, 58515 - 58559
Alignment:
Q  447 tattctctgtttcactggtctctattcgtcttgagcatggatctg 491  Q
    |||| |||||||||| ||||||| ||||||||||||| |||||||    
T  58515 tattatctgtttcaccggtctcttttcgtcttgagcagggatctg 58559  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 472 - 512
Target Start/End: Complemental strand, 426597 - 426557
Alignment:
Q  472 tcgtcttgagcatggatctgattgttaaataaaatttgctg 512  Q
    |||||||||| | |||||||||| |||||||||||||||||    
T  426597 tcgtcttgagtagggatctgatttttaaataaaatttgctg 426557  T

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