View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19564_low_10 (Length: 313)
Name: NF19564_low_10
Description: NF19564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19564_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 25 - 308
Target Start/End: Complemental strand, 20991276 - 20990995
Alignment:
| Q |
25 |
gataattggtttcacggattctatcattcctctaaatccaaagccagtaacaagccacaaagaaaatattgatccaactatttctaaagttaatgcaggg |
124 |
Q |
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| T |
20991276 |
gataattggtttcacggattctatcattcctctaaatccaaagccagtaacaagccacaaagaaaatattgatccaactatctctaaagttaatgcaggg |
20991177 |
T |
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| Q |
125 |
agagactttgacctcaatgaacaacccaaatactcaaggaagatcatcaaataacacatacatacataaacgaaattcatcacttcaagtcttcaaccag |
224 |
Q |
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| T |
20991176 |
aga--ctttgacctcaatgaacaacccaaatactcaaggaagatcatcaaataacacatacatacataaacgaaattcatcacttcaagtattcaaccag |
20991079 |
T |
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| Q |
225 |
catcaatattgaatactaaacactgttaggcctgaactgccactcattatacaactttcccaaatgtcttgtacctttgcttct |
308 |
Q |
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| T |
20991078 |
catcaatattgaatactaaacactgttaggcctgaactgccactcattatacaactttcccaaatgtcttgtaccattgcttct |
20990995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 126 - 188
Target Start/End: Original strand, 20992398 - 20992460
Alignment:
| Q |
126 |
gagactttgacctcaatgaacaacccaaatactcaaggaagatcatcaaataacacatacata |
188 |
Q |
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| T |
20992398 |
gagacttcgatctcactgaacaacccaaaaactcaaggtagatcatcaaataacacatgcata |
20992460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 45905541 - 45905577
Alignment:
| Q |
147 |
aacccaaatactcaaggaagatcatcaaataacacat |
183 |
Q |
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| T |
45905541 |
aacccaaatgctcaaggaagaacatcaaataacacat |
45905577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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