View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19564_low_12 (Length: 299)
Name: NF19564_low_12
Description: NF19564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19564_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 143 - 283
Target Start/End: Complemental strand, 30481918 - 30481778
Alignment:
| Q |
143 |
ccatgaatcggtaaaattaagaaaaactaaagtgtatttaagtcattcttttaatatttgt-gttggctgttgaggggaaggtagtgtctggcgttggat |
241 |
Q |
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| T |
30481918 |
ccatgaatcggtaaaattaggagat-caaaagtgtatttaagtcattcttttaatatttggcgttggatgttgaggggaaggtagtgtctggcgttggat |
30481820 |
T |
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| Q |
242 |
attgaagcagaaggagtgtaaggtaggaaaggttggtagatg |
283 |
Q |
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| T |
30481819 |
attgaagcagaaggagtgtaaggtaggaaaggttggtagatg |
30481778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 30482060 - 30481986
Alignment:
| Q |
1 |
tcgtatcactaagtgacttgcctgttcattattcaaattgacatatcaacaaaaataagttgtaaattcaatcgc |
75 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
30482060 |
tcgtatcactaagtgacttgcctgttcattattcaaattgacatatcaacaaaaataagtcgtaaattcaatcgc |
30481986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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