View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19564_low_14 (Length: 255)
Name: NF19564_low_14
Description: NF19564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19564_low_14 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 20 - 255
Target Start/End: Complemental strand, 55472579 - 55472345
Alignment:
| Q |
20 |
gcatgtgaaatttgatcaaccagtaaatttggcggatgggttgaatatatgactttataatttaccacttcttgcatttttgttttaacttattcacgta |
119 |
Q |
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| T |
55472579 |
gcatgtgaaatttgatcaaccagtaaatttggcggatgggttgaatatatgactttataatttaccacttcttgcatttttgttttaacttattcacgta |
55472480 |
T |
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| Q |
120 |
ttcgtttaggtaaatggcttatttgaatctctacttttagcatttgtcttgtttgtaccatatccattccacatatatagtccattggctcttccatcat |
219 |
Q |
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| T |
55472479 |
ttcgtttaggaaaatggcttatttgaatctctacttttagcatttgtcttgtttgtaccatatccattccacatatatagtcca-tggctcttccattat |
55472381 |
T |
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| Q |
220 |
gattttgtgacggtcaattcagcttataaattttta |
255 |
Q |
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| T |
55472380 |
gattttgtgacggtcaattcagcttataaattttta |
55472345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 47 - 251
Target Start/End: Original strand, 55438668 - 55438869
Alignment:
| Q |
47 |
tttggcggatgggttgaatatatgactttataatttaccacttcttgcatttttgttttaacttattcacgtattcgtttaggtaaatggcttatttgaa |
146 |
Q |
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| T |
55438668 |
tttgggggatgggttgaatatatgactttatactttaccacttctagcattcttgttttaacttattcgtgtatttgttggggaaaatggcttatttgaa |
55438767 |
T |
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| Q |
147 |
tctctacttttagcatttgtcttgtttgtaccatatccattccacatatatagtccattggctcttccatcatgattttgtgacggtcaattcagcttat |
246 |
Q |
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| T |
55438768 |
tctctagttttagc-tttttcttg-ttgtaccatttctatgccacatctgtagtcca-tggctcttctattatgattttgtgaccgtcaatttaacttat |
55438864 |
T |
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| Q |
247 |
aaatt |
251 |
Q |
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| T |
55438865 |
aaatt |
55438869 |
T |
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