View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19564_low_16 (Length: 205)

Name: NF19564_low_16
Description: NF19564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19564_low_16
NF19564_low_16
[»] chr4 (1 HSPs)
chr4 (18-192)||(55000186-55000360)
[»] chr3 (4 HSPs)
chr3 (126-192)||(45060147-45060213)
chr3 (126-192)||(45081858-45081924)
chr3 (18-75)||(45060091-45060148)
chr3 (18-75)||(45081923-45081980)
[»] scaffold0085 (1 HSPs)
scaffold0085 (164-192)||(14592-14620)


Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 55000360 - 55000186
Alignment:
Q  18 gtttgcccatatgactttgaatctagctatgaaatcaaattggggataatcattcttttacacctctcatcttttaacaattaattcattgttaaacaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  55000360 gtttgcccatatgactttgaatctagctatgaaatcaaattggggataatcgttcttttacacctctcatcttttaacaattaattcattgttaaacaaa 55000261  T
Q  118 ctaggaaattcaaccctctttgaattctctactggaaaataactttggatgcatcggctattcaaaattcttctc 192  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  55000260 ctaggaaattcaaccctctttgaatcctctactggaaaataactttggatgcatcggctattcaaaattcttctc 55000186  T

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Target: chr3 (Bit Score: 59; Significance: 3e-25; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 126 - 192
Target Start/End: Original strand, 45060147 - 45060213
Alignment:
Q  126 ttcaaccctctttgaattctctactggaaaataactttggatgcatcggctattcaaaattcttctc 192  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  45060147 ttcaaccctctttgaatcctctactggaaaataacttcggatgcatcggctattcaaaattcttctc 45060213  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 126 - 192
Target Start/End: Complemental strand, 45081924 - 45081858
Alignment:
Q  126 ttcaaccctctttgaattctctactggaaaataactttggatgcatcggctattcaaaattcttctc 192  Q
    ||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||    
T  45081924 ttcaaccctctttgaatcctctaccgaaaaataactttggatgcatcggctattcaaaattcttctc 45081858  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 45060091 - 45060148
Alignment:
Q  18 gtttgcccatatgactttgaatctagctatgaaatcaaattggggataatcattcttt 75  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  45060091 gtttgcccacatgactttgaatctagctatgaaatcaaattggggataatcgttcttt 45060148  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 45081980 - 45081923
Alignment:
Q  18 gtttgcccatatgactttgaatctagctatgaaatcaaattggggataatcattcttt 75  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||    
T  45081980 gtttgcccacatgactttgaatctagctatgaaatcaaattgaggataatcgttcttt 45081923  T

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Target: scaffold0085 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 192
Target Start/End: Original strand, 14592 - 14620
Alignment:
Q  164 ggatgcatcggctattcaaaattcttctc 192  Q
    |||||||||||||||||||||||||||||    
T  14592 ggatgcatcggctattcaaaattcttctc 14620  T

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