View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19564_low_4 (Length: 631)
Name: NF19564_low_4
Description: NF19564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19564_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 14 - 615
Target Start/End: Complemental strand, 18244655 - 18244057
Alignment:
| Q |
14 |
aggacggcataagaagacgtctgacagcgagaatagaatgacccctttctgcaagacttactgacaatatatatggccatacatacatttgtggttatct |
113 |
Q |
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| T |
18244655 |
aggacggcataagaagacgtctgacagctagaatagaatgacccctttctgcaagacttactgacaatatatatggccatacatacatttgtggttatct |
18244556 |
T |
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| Q |
114 |
caaattccctatcttatagggaaccttatttttactcaactaggtaaaagtaaaaccatattgtaagcactttttacaattttagcagttctaatttgta |
213 |
Q |
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| T |
18244555 |
caaattccctatcttatagggaaccttatttttactcaactaggtaaaagtaaaaccatattgtaagcactttttacaattttagcagttctaatttgta |
18244456 |
T |
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| Q |
214 |
gcttcaccaaagaaaacaaattggtcataactacttgagtttggtttattgataaaacaatttttaatcagattttatttaccactcagttgaacttgga |
313 |
Q |
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| T |
18244455 |
gcttcaccaaag--aacaaattggtcataactacttgaatttggtttattgataaaacaatttttaatcagattttatttaccactcagttgaacttgga |
18244358 |
T |
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| Q |
314 |
ttatcagagtctattttccttaaaaactggagggttaacacgannnnnnnnncttctaaattcacattggcaaagttagcaaacggttatgttcttgacc |
413 |
Q |
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| T |
18244357 |
ttatcagagtctattttccttaaaaattggagggttaacacga-ttttttttcttctaaactcacattggcaaagttagcaaaccgttgtgttcttgagc |
18244259 |
T |
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| Q |
414 |
atgttattgtgaaatgaacnnnnnnnnaggtctctaggcttccctaaatttaggctatgactatcaattagaaatatctttcgagtgatttaccattcaa |
513 |
Q |
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| T |
18244258 |
atgttattgtgaaatgaacttttttttaggtctctaggcttccctaaatttaggctatgactatcaattagaaatatctttcgagtgatttaccattcaa |
18244159 |
T |
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| Q |
514 |
taattacaaaatgataacaacaaatgtatgtatataatgatgattatgactaatactcatgaaaaggttccttgtgacttttgtttcatgacaagaggat |
613 |
Q |
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| T |
18244158 |
taattacaaaatgataacaacaaatgtatgtatataatgatgattatgactaatactcatgaaaaggttccttgtgacttttgttccatgacaagaggat |
18244059 |
T |
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