View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19564_low_7 (Length: 500)
Name: NF19564_low_7
Description: NF19564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19564_low_7 |
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| [»] scaffold0532 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 7 - 489
Target Start/End: Complemental strand, 6739230 - 6738748
Alignment:
| Q |
7 |
gtgagatgaaatgtatggtcacttatcattcggattcttgtgttattcgggacctagccacgaggaggatgattggttcgggtagcttgcaaaatggggt |
106 |
Q |
| |
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|||| ||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6739230 |
gtgatatgaaatgtatggtcacttatcactctgattcttgtgttattcaggacctagccacgaggaggatgattggttcgggtagcttgcaaaatggggt |
6739131 |
T |
|
| Q |
107 |
ttatgtgctcaaagaagtggatcaaggaacgaattatgctacaaatcaaggagacaacaccactctttggcactgcagaatgggtcatccctcaactcag |
206 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6739130 |
ttatgtgctcaaagaagtggatcaaggaacggcttatgctacaaatcaaggagacaacaccactctttggcactgcagaatgggtcatccctcaattcag |
6739031 |
T |
|
| Q |
207 |
tctcttcagcaattgtctggtttaattaaatgtagttttgatttcaataaaatagactgttgtgacatatgtcacaagtccaagcaatgtagactctctt |
306 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
6739030 |
tctcttcagcaattgtctggtttaattaaatgtagttttgatttcaataaaatagactgttgtgacatatgtcacaagtccaagcaatgtagactctcct |
6738931 |
T |
|
| Q |
307 |
ttacacaaagcatgaataaagctgagagaccttttgatttagttcattgtgatttgtgaggaaagtataatactgcttcaagtgatggatcacactattt |
406 |
Q |
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|||| |||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
6738930 |
ttacccaaagcatgaataaagctgaaaggccttttgatttagttcattgtgatttgtggggaaagtataatactgcttcaagtgatggatcacactattt |
6738831 |
T |
|
| Q |
407 |
tctaacattggttgatgatcatacacgtgcaacttgggtgtatctaatgaaacataagagtcaaaccaccaatatactgatga |
489 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
6738830 |
tctaacattagttgatgatcatacacgtgcaacttgggtgtatctaatgaaacataagagccaaaccaccaatatacttatga |
6738748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 7 - 489
Target Start/End: Complemental strand, 52080825 - 52080343
Alignment:
| Q |
7 |
gtgagatgaaatgtatggtcacttatcattcggattcttgtgttattcgggacctagccacgaggaggatgattggttcgggtagcttgcaaaatggggt |
106 |
Q |
| |
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|||| ||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52080825 |
gtgatatgaaatgtatggtcacttatcactctgattcttgtgttattcaggacctagccacgaggaggatgattggttcgggtagcttgcaaaatggggt |
52080726 |
T |
|
| Q |
107 |
ttatgtgctcaaagaagtggatcaaggaacgaattatgctacaaatcaaggagacaacaccactctttggcactgcagaatgggtcatccctcaactcag |
206 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
52080725 |
ttatgtgctcaaagaagtggatcaaggaacggcttatgctacaaatcaaggagacaacaccactctttggcactgcagaatgggtcatccctcaattcag |
52080626 |
T |
|
| Q |
207 |
tctcttcagcaattgtctggtttaattaaatgtagttttgatttcaataaaatagactgttgtgacatatgtcacaagtccaagcaatgtagactctctt |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
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| T |
52080625 |
tctcttcagcaattgtctggtttaattaaatgtagttttgatttcaataaaatagactgttgtgacatatgtcacaagtccaatcaatgtagactctcct |
52080526 |
T |
|
| Q |
307 |
ttacacaaagcatgaataaagctgagagaccttttgatttagttcattgtgatttgtgaggaaagtataatactgcttcaagtgatggatcacactattt |
406 |
Q |
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|||| |||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52080525 |
ttactcaaagcatgaataaagctgaaaggccttttgatttagttcattgtgatttgtggggaaagtataatactgcttcaagtgatggatcacactattt |
52080426 |
T |
|
| Q |
407 |
tctaacattggttgatgatcatacacgtgcaacttgggtgtatctaatgaaacataagagtcaaaccaccaatatactgatga |
489 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
52080425 |
tctaacattagttgatgatcatacacgtgcaacttgggtgtatctaatgaaacataagagccaaaccaccaatatacttatga |
52080343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 105; Significance: 3e-52; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 165 - 429
Target Start/End: Complemental strand, 33723041 - 33722777
Alignment:
| Q |
165 |
accactctttggcactgcagaatgggtcatccctcaactcagtctcttcagcaattgtctggtttaattaaatgtagttttgatttcaataaaatagact |
264 |
Q |
| |
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|||||||||||||||| ||||||||| || |||||||| |||||||| |||| | ||| |||| || || ||||||||| |||||||||| |||| | |
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| T |
33723041 |
accactctttggcactacagaatgggacacccctcaacacagtctctgcagcgtctctctagttttatcaattgtagttttaatttcaataatttagatt |
33722942 |
T |
|
| Q |
265 |
gttgtgacatatgtcacaagtccaagcaatgtagactctcttttacacaaagcatgaataaagctgagagaccttttgatttagttcattgtgatttgtg |
364 |
Q |
| |
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|||||||||||||||||||||| |||||| |||||| ||||| | || || || ||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33722941 |
gttgtgacatatgtcacaagtcaaagcaacatagacttccttttcctcatagtatcaataaagctgagagaccttttgatttagtacattgtgatttgtg |
33722842 |
T |
|
| Q |
365 |
aggaaagtataatactgcttcaagtgatggatcacactattttctaacattggttgatgatcata |
429 |
Q |
| |
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|||| ||||||||||||||| | ||||||| || |||||||| || || || |||||||||| |
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| T |
33722841 |
gggaagatataatactgcttcacataatggatctcattattttcttactttagtggatgatcata |
33722777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 237 - 429
Target Start/End: Complemental strand, 33796462 - 33796270
Alignment:
| Q |
237 |
tgtagttttgatttcaataaaatagactgttgtgacatatgtcacaagtccaagcaatgtagactctcttttacacaaagcatgaataaagctgagagac |
336 |
Q |
| |
|
||||||||| |||||||||| |||| ||||||||||||||||||||||| |||||| |||||| ||||| | || || || ||||||||| |||||| |
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| T |
33796462 |
tgtagttttaatttcaataatttagattgttgtgacatatgtcacaagtcaaagcaacatagacttccttttcctcatagtatcaataaagctaagagac |
33796363 |
T |
|
| Q |
337 |
cttttgatttagttcattgtgatttgtgaggaaagtataatactgcttcaagtgatggatcacactattttctaacattggttgatgatcata |
429 |
Q |
| |
|
||||||||||||| |||||||||||||| |||| ||||||||| ||||| | ||||||| || |||||||| || || || |||||||||| |
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| T |
33796362 |
cttttgatttagtacattgtgatttgtggggaagatataatacttcttcacataatggatctcattattttcttactttagtggatgatcata |
33796270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 33723167 - 33723093
Alignment:
| Q |
39 |
gattcttgtgttattcgggacctagccacgaggaggatgattggttcgggtagcttgcaaaatggggtttatgtg |
113 |
Q |
| |
|
||||||||||| || | |||||||||||||||||||| |||||| ||||||||| ||| ||||||||||||||| |
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|
| T |
33723167 |
gattcttgtgtgatacaggacctagccacgaggaggacgattggatcgggtagcatgcgtaatggggtttatgtg |
33723093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 33796638 - 33796564
Alignment:
| Q |
39 |
gattcttgtgttattcgggacctagccacgaggaggatgattggttcgggtagcttgcaaaatggggtttatgtg |
113 |
Q |
| |
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||||||||||| || | |||||||||||||||||||| |||||| ||||||||| ||| ||||||||||||||| |
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|
| T |
33796638 |
gattcttgtgtgatacaggacctagccacgaggaggacgattggatcgggtagcatgcgtaatggggtttatgtg |
33796564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0532 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0532
Description:
Target: scaffold0532; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 364
Target Start/End: Complemental strand, 1339 - 1239
Alignment:
| Q |
264 |
tgttgtgacatatgtcacaagtccaagcaatgtagactctcttttacacaaagcatgaataaagctgagagaccttttgatttagttcattgtgatttgt |
363 |
Q |
| |
|
||||||||||||||||||| || || |||||||||| |||||| ||||| | |||||||||||||| || |||||||| | || |||||||||| |
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|
| T |
1339 |
tgttgtgacatatgtcacagatctaaacaatgtagacatccttttattcaaagtgttaataaagctgagaggccatttgatttgatacactgtgatttgt |
1240 |
T |
|
| Q |
364 |
g |
364 |
Q |
| |
|
| |
|
|
| T |
1239 |
g |
1239 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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