View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19564_low_9 (Length: 358)
Name: NF19564_low_9
Description: NF19564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19564_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 19 - 348
Target Start/End: Complemental strand, 329984 - 329655
Alignment:
| Q |
19 |
ctactgtagaggataggaatggtgtttgcatagaaatatgaataataataataattatcaatctcctccatcttctacacagcatgctgaacttgatttg |
118 |
Q |
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| T |
329984 |
ctactgtagaggataggaatggtgtttgcatagaaatatgaataataataataattatcaatctccttcatcttctacacagcatgctgaacttgatttg |
329885 |
T |
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| Q |
119 |
tgtgctccggttgattatccaatggcatgtattgggccattattgcccttatttcatcatccatatatctctgcagtacacacaattattgtattttagt |
218 |
Q |
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| T |
329884 |
tgtgctccggttgattatccaatggcatgtattgggccattattgcccttatttcatcatccatatatctctgcagtacacacaattattgtattttagt |
329785 |
T |
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| Q |
219 |
ttcaacaattttaggtaggactagatttcaatgcttaaaatgtaccactgagaatgaatgaatgatacctgaattctgtacttgtagaaaacatatccta |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
329784 |
ttcaacaattttaggtaggactagatttcaatgcttaaaatgtaccactgagaatgaatgaatgatacctgaattctgtacttgtagaaaacatatccta |
329685 |
T |
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| Q |
319 |
cggcaccacacgtacccaataacagtataa |
348 |
Q |
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| T |
329684 |
cggcaccacacgtacccaataacagtataa |
329655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 193
Target Start/End: Original strand, 27409736 - 27409802
Alignment:
| Q |
127 |
ggttgattatccaatggcatgtattgggccattattgcccttatttcatcatccatatatctctgca |
193 |
Q |
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| T |
27409736 |
ggttgattatccaaaggcatgtattgagccataattgcacgtatctcagtgtccatatatctctgca |
27409802 |
T |
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