View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19565_high_2 (Length: 479)
Name: NF19565_high_2
Description: NF19565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19565_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 59 - 467
Target Start/End: Original strand, 14359873 - 14360281
Alignment:
| Q |
59 |
attgtaattaggagtgtatgtgtacataaatttgatattcattgaaccaaattatatacaaattgagactaaataataaggattgcatttcaaaaccaaa |
158 |
Q |
| |
|
|||| |||||| ||| || ||||||||||| | |||||||| |||| |||| ||||| |||||||| |||||||||||||||||||||||||||||| || |
|
|
| T |
14359873 |
attgcaattagaagtttacgtgtacataaactggatattcactgaatcaaactatatccaaattgaaactaaataataaggattgcatttcaaaaccgaa |
14359972 |
T |
|
| Q |
159 |
ccagaagtcttcctgtttggttatgtcaaaccagtttccaaactgtatttaaaaccaggtttcttctttgatattttgtnnnnnnnttgtccatgacaag |
258 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
14359973 |
ccagatgtcttcctgtttggttatgtcaaaccagtttccaaactgtatttaaaaccaggtttcttctttgatattttgtaaaaaaattgtccatgacaag |
14360072 |
T |
|
| Q |
259 |
cacgctggaaacaaacattggaatgacaatttaccaaaagtaatgttctgatgcacagtcagcttgccttcaagaagaaagaatatttcagtttgcaacc |
358 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
14360073 |
cacgctgaaaacaaacattggaatgacaatttaccaaaagcaatgttctgatgcacagtcagcttgccttcaagaagcaagaatatttcagtttgcaacc |
14360172 |
T |
|
| Q |
359 |
aatctaatcaattgagtcttgttagtcaattttatattctcagtacaagattgaaaattatatcagtcatttcagcagtaaaacaacaacatattggttc |
458 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||| |||||| |||||||||||| |||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
14360173 |
aatctaatcaattgagtcttgtttgtcaattttatcttcccagtactagattgaaaattgtatcggtcatttcagcagtaaaacgacaacatattggttc |
14360272 |
T |
|
| Q |
459 |
catatcctt |
467 |
Q |
| |
|
|| |||||| |
|
|
| T |
14360273 |
caaatcctt |
14360281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University