View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19565_high_3 (Length: 421)
Name: NF19565_high_3
Description: NF19565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19565_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 7 - 404
Target Start/End: Complemental strand, 40729278 - 40728881
Alignment:
| Q |
7 |
atattcatcttcgtccaccactcataaccctatttcccctgatcaacacatcaaaaccctcaccgatcgtttcatgaaagactgtgctctaggtctctgg |
106 |
Q |
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| T |
40729278 |
atattcatcttcctccaccactcataatcctatttcccctgatcaacacatcaaagccctcgccgatcgtttcatgaaagacggtgctctagatctctgg |
40729179 |
T |
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| Q |
107 |
aacaacctcgacggcccagaaacctaccagacccaaacccaagcccaggcccagactcaatcccaagcatcgccgcaaattgatttacgcagtcggaatt |
206 |
Q |
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| T |
40729178 |
aacgacctcgacggccctgaaacctaccagacccaaacccaagcccaggcccagattcaatcccaagcatcgccgcaaattgatttacgcagtcggaatt |
40729079 |
T |
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| Q |
207 |
tgaataactattcacaaattagggggtaccgttctgttcctgaggttagggattctattcgttccgttcctagggttagggatttgagtgatcagaatag |
306 |
Q |
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| T |
40729078 |
tgaataactattcacaaattaggggctaccgttctgttcctgaggttaaggattctattcgttccgttcctagggttagggatttgagtgatcagaatag |
40728979 |
T |
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| Q |
307 |
ggttgggacggaaaagcctgaacggcgaaaaatttggagaaagaatgattcttcgagtgatagtgagagtgagagtgaagtggaatcaaagaatgagg |
404 |
Q |
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| T |
40728978 |
ggttgggacggaaaagcctgaacggcgaaaaatttggagaaagaatgattcttcgagtgatagtgatagtgagagtgaagtggaatcaaagaatgagg |
40728881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 265 - 374
Target Start/End: Complemental strand, 50842002 - 50841894
Alignment:
| Q |
265 |
tcgttccgttcctagggttagggatttgagtgatcagaatagggttgggacggaaaagcctgaacggcgaaaaatttggagaaagaatgattcttcgagt |
364 |
Q |
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|||||| ||||||||| ||||||||||||||||| |||| ||||||||| | ||||||||||| || ||||||||||||| |||||||||||||| ||| |
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| T |
50842002 |
tcgttctgttcctagg-ttagggatttgagtgataagaagagggttggggcaaaaaagcctgaaaggagaaaaatttggaggaagaatgattcttctagt |
50841904 |
T |
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| Q |
365 |
gatagtgaga |
374 |
Q |
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|||||||||| |
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| T |
50841903 |
gatagtgaga |
50841894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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