View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19565_low_1 (Length: 872)
Name: NF19565_low_1
Description: NF19565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19565_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 519; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 285 - 858
Target Start/End: Complemental strand, 36602086 - 36601515
Alignment:
| Q |
285 |
aacatgctttcaactttaaatgtacttatagcttattccctcatgacgtatttcaggttcagataaaaccaaattggattggagtaaaaggtataaagtt |
384 |
Q |
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| T |
36602086 |
aacatactttcaactttaaatgtacttatagcttattccctcatgatgtatttcaggttcagataaaaccaaattggattggagtaaaaggtataaagtt |
36601987 |
T |
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| Q |
385 |
gctcttggaattgctgatggtcttctctatttgcatgagaattgtcaaaggcgaataattcatagagatattaaggcagaaaatatactactcacagaga |
484 |
Q |
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| T |
36601986 |
gctctcggaattgctgatggtcttctctatttgcatgagaattgtcaaaggcgaataattcatagagatattaaggcagaaaatatactactcacagaga |
36601887 |
T |
|
| Q |
485 |
attttgatccacaggtttttatttaacttgttcgtcggatataatgaggaaataatttatctgtagtattacttaacacatgaaatattttatgttgttg |
584 |
Q |
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| T |
36601886 |
attttgatccacaggtttttatttaacttgttcgtcggatataatgaggaaataatttatctgtagtattacttaacacatgaaatattttatgttgttg |
36601787 |
T |
|
| Q |
585 |
tgtgttatatgttaaacattctctttgttttgttaatacatgttcttactgtaagttagaccagtagctagaaatatcttttgagaatcttttgtattat |
684 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
36601786 |
tgtgttatatgttaaacat--tctttgttttgttaatacatgttcttaccgtaagttagaccagtagctagcaatatattttgagaatcttttgtattat |
36601689 |
T |
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| Q |
685 |
tgtatacaatcttattggtgcacacataatctttcttcttttttcggtcctttattaatcaagaatttgtacagatttgtgattttggacttgcaaagtg |
784 |
Q |
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| T |
36601688 |
tgtatacaatcttattggtgcacacaaaatttttcttctattttcgggcttttattaatcaagaatttgtacagatttgtgattttggacttgcaaagtg |
36601589 |
T |
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| Q |
785 |
gttaccagaacaattgactcaccataatatgtccacatttgaaggcacattcgggtatgcaaacatgaaatact |
858 |
Q |
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| T |
36601588 |
gttaccagaacaattgactcaccataatatgtccacatttgaaggcacattcgggtatgcaaacatgaaatact |
36601515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 7 - 284
Target Start/End: Complemental strand, 36602398 - 36602121
Alignment:
| Q |
7 |
ggagcacagatgaaaagacagctggctttctatctgagttaggagttattgctcatgttgatcatcctaatactgcaaagcttgttggatgttgtgtaga |
106 |
Q |
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| T |
36602398 |
ggagcacagatgaaaagacagctggctttctatctgagttaggagttattgctcatgttgatcatcctaataccgcaaagcttgttggatgttgtgtaga |
36602299 |
T |
|
| Q |
107 |
gggagaaatgcatcttgtcttcgaattgtctacactgggaagtttaggatatgttcttcatggtttgtagatactttgaactctctcatgatgacaatca |
206 |
Q |
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| T |
36602298 |
gggagaaatgcatcttgtcttcgaattgtctacactgggaagtttaggatacgttcttcatggtttgtagatactttgaactctctcatgatgacaatca |
36602199 |
T |
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| Q |
207 |
cttttgaacttattttgtttttatatcaaatggaatgaaactcaatactcgagggtttacaaccctcgcacacatatt |
284 |
Q |
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| T |
36602198 |
cttttaaacttattttgttttcatatcaaatggaatcaaactcaatactcgagggtttacaaccctcgcacacatatt |
36602121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 9e-20; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 394 - 500
Target Start/End: Original strand, 47015537 - 47015643
Alignment:
| Q |
394 |
attgctgatggtcttctctatttgcatgagaattgtcaaaggcgaataattcatagagatattaaggcagaaaatatactactcacagagaattttgatc |
493 |
Q |
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| T |
47015537 |
attgctgatggactcctatatcttcatgagaattgtcaaaggcgaatcattcatagagatattaaagcagagaatgttcttctcacagagaactttgagc |
47015636 |
T |
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| Q |
494 |
cacaggt |
500 |
Q |
| |
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| T |
47015637 |
ctcaggt |
47015643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 756 - 850
Target Start/End: Original strand, 47016684 - 47016778
Alignment:
| Q |
756 |
cagatttgtgattttggacttgcaaagtggttaccagaacaattgactcaccataatatgtccacatttgaaggcacattcgggtatgcaaacat |
850 |
Q |
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| T |
47016684 |
cagatttgtgattttggacttgcaaagtggttaccagaacaatgtagccaccataatgtatcaaaatctgaaggaacattcgggtacgcaaacat |
47016778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 124
Target Start/End: Original strand, 47014089 - 47014181
Alignment:
| Q |
32 |
ctttctatctgagttaggagttattgctcatgttgatcatcctaatactgcaaagcttgttggatgttgtgtagagggagaaatgcatcttgt |
124 |
Q |
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||||||||||||| |||| ||||||||||| | | |||||||| ||||| | ||| |||||||| ||||||| ||||||||||| ||||| |
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| T |
47014089 |
ctttctatctgagctaggcattattgctcatctaaaccatcctaacactgccagacttattggatgtggtgtagaaggagaaatgcaccttgt |
47014181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 764 - 840
Target Start/End: Complemental strand, 6987580 - 6987504
Alignment:
| Q |
764 |
tgattttggacttgcaaagtggttaccagaacaattgactcaccataatatgtccacatttgaaggcacattcgggt |
840 |
Q |
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||||||||| ||||||||||||||||| || |||| ||||||||||| | | |||| | | ||||||||||| |||| |
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| T |
6987580 |
tgattttgggcttgcaaagtggttacctgatcaatggactcaccatactgtctccaaagtggaaggcacatttgggt |
6987504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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