View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19565_low_10 (Length: 222)
Name: NF19565_low_10
Description: NF19565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19565_low_10 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 4 - 222
Target Start/End: Complemental strand, 9354975 - 9354756
Alignment:
| Q |
4 |
tcaatacttcgattagagtgcttagggcaattattcttacaagcatgtctatctttcaatcccttttatctttcttagcattacctgcttcaaagtcaaa |
103 |
Q |
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| T |
9354975 |
tcaatacttcgattagagtgcttagggcaattattgttacaagcatgtctatctttcaatcccttttatctttcttagcattacctgcttcaaagtcgaa |
9354876 |
T |
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| Q |
104 |
gtcaaccaaatggttaagggttgaaaaacttatgcatatatgtg-aaataacttggagaatttcaatgagttaagagcaacactagaagtggcttagacg |
202 |
Q |
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| T |
9354875 |
gtcaaccaaatggttaagggttgaaaaacttatgcatatatgtgaaaataacttggagaatttcaatgagttaagagcaacactagaagtggcttggacg |
9354776 |
T |
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| Q |
203 |
cctcatctttagcaactata |
222 |
Q |
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| T |
9354775 |
cctcatctttagcaactata |
9354756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 4 - 134
Target Start/End: Complemental strand, 9307710 - 9307580
Alignment:
| Q |
4 |
tcaatacttcgattagagtgcttagggcaattattcttacaagcatgtctatctttcaatcccttttatctttcttagcattacctgcttcaaagtcaaa |
103 |
Q |
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| T |
9307710 |
tcaataatttgattagagtgcttagggcagtcattcttacaagcatgtcaatctttcaatcccttttatcttttttagcattacctgcttcaaagtcata |
9307611 |
T |
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| Q |
104 |
gtcaaccaaatggttaagggttgaaaaactt |
134 |
Q |
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| T |
9307610 |
gtcaaccaaaaggttaagggttgcaaaactt |
9307580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 9335635 - 9335583
Alignment:
| Q |
70 |
tatctttcttagcattacctgcttcaaagtcaaagtcaaccaaatggttaagg |
122 |
Q |
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| T |
9335635 |
tatctttcttagcattacctgcttcaaagtcaaagtcaaccaaatggttaagg |
9335583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 9347569 - 9347504
Alignment:
| Q |
4 |
tcaatacttcgattagagtgcttagggcaattattcttacaagcatgtctatctttcaatcccttt |
69 |
Q |
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| T |
9347569 |
tcaatactttgattagagtgcttaaggaagttattgttacaagcatgtctatctttcaatcccttt |
9347504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 9354719 - 9354677
Alignment:
| Q |
180 |
caacactagaagtggcttagacgcctcatctttagcaactata |
222 |
Q |
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| T |
9354719 |
caacactagaagtggcttggacgcctcatctttagcaactata |
9354677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 122
Target Start/End: Complemental strand, 9372499 - 9372465
Alignment:
| Q |
88 |
ctgcttcaaagtcaaagtcaaccaaatggttaagg |
122 |
Q |
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| T |
9372499 |
ctgcttcagagtcaaagtcaaccaaatggttaagg |
9372465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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