View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19565_low_4 (Length: 421)
Name: NF19565_low_4
Description: NF19565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19565_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 69 - 228
Target Start/End: Complemental strand, 47287252 - 47287093
Alignment:
| Q |
69 |
aatttcgtacactaaacaaacccaaatcccaccaacactttactagtaaaatattaatctaactactagctactcaattccaacactctacctccttttc |
168 |
Q |
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| T |
47287252 |
aatttcgtacactaaacaaacccaaatcccaccaacactttactagtaaaatattaatccaactactagctactcaattccaacactctacctccttttc |
47287153 |
T |
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| Q |
169 |
tcttctaacccacccaaaatgagctctatcacattaatcttaattttcttcatactatct |
228 |
Q |
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| T |
47287152 |
tcttctaacccacccaaaatgagctctatcacattaatcctaattttcttcatactatct |
47287093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 313 - 405
Target Start/End: Complemental strand, 47287005 - 47286913
Alignment:
| Q |
313 |
ccctctagcaatcaaggagaatgggaactaatacaaccaaccattggcatttcagctatgcacatgcaactttcacacaacaataaaatcata |
405 |
Q |
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| T |
47287005 |
ccctctagcaatcaaggagaatgggaactaatacaaccaaccattggcatttcagctatgcacatgcaactttcacacaacaataaaatcata |
47286913 |
T |
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