View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19565_low_5 (Length: 379)
Name: NF19565_low_5
Description: NF19565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19565_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 128 - 361
Target Start/End: Original strand, 927018 - 927251
Alignment:
| Q |
128 |
gtgattttagttgttttgtgattcaagagatggcttgtgggatgggtttctaaagagcagaaacaggatggataggcatcactgcatcaattacggtggt |
227 |
Q |
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| T |
927018 |
gtgattttagttgttttgtgattcaagagatggcttgtgggatgggtttctaaagagcagaaacaggatggataggcatcactgcatcaattacggtggt |
927117 |
T |
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| Q |
228 |
ctctaatctatagctaagctactagtgtctaataatttgataatttcaacaccatttttatgtatatcatttacatcttcactaatctaccacaatttta |
327 |
Q |
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| T |
927118 |
ctctaatctatagctaagctactagtgtctaataatttgataatttcaacaccatttttatgtatatcatttacatcttcactaatctaccacaatttta |
927217 |
T |
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| Q |
328 |
tatagctttgatcttcctaggatgcaccttatag |
361 |
Q |
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| T |
927218 |
tatacctttgatcttcctaggatgcaccttatag |
927251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 926438 - 926560
Alignment:
| Q |
1 |
tcgaagttgggatcaagcaagaaagtgaagtaatggatttcaaggttgcttcatgtctctgcctaccttggttgacttgaatatgcattaaatgggatcc |
100 |
Q |
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| T |
926438 |
tcgaagttgggatcaagcaagaaagtgaagtaatggatttcaaggctgcttcatgtctctgcctaccttggttgacttgaatatgcattaaatgggatcc |
926537 |
T |
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| Q |
101 |
aaacctatgaagctcacatccat |
123 |
Q |
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| T |
926538 |
aaacctatgaagctcacatccat |
926560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 29 - 111
Target Start/End: Original strand, 924473 - 924555
Alignment:
| Q |
29 |
agtaatggatttcaaggttgcttcatgtctctgcctaccttggttgacttgaatatgcattaaatgggatccaaacctatgaa |
111 |
Q |
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| T |
924473 |
agtaagggatttcaaggctgctttatgtctctgcctgccatggttgacttgaatatgcattaaaatggatccaagcctatgaa |
924555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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