View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19565_low_6 (Length: 368)

Name: NF19565_low_6
Description: NF19565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19565_low_6
NF19565_low_6
[»] chr3 (11 HSPs)
chr3 (1-225)||(9358761-9358986)
chr3 (1-124)||(47820896-47821022)
chr3 (1-123)||(28934748-28934868)
chr3 (58-117)||(28956951-28957010)
chr3 (58-123)||(31525363-31525427)
chr3 (63-123)||(53349401-53349460)
chr3 (63-123)||(8431491-8431549)
chr3 (63-123)||(55166896-55166955)
chr3 (63-123)||(43073120-43073178)
chr3 (58-129)||(20701139-20701209)
chr3 (1-50)||(52076136-52076185)
[»] chr2 (4 HSPs)
chr2 (232-366)||(4781836-4781974)
chr2 (63-123)||(41378272-41378332)
chr2 (63-124)||(14732414-14732474)
chr2 (63-124)||(41419616-41419676)
[»] chr8 (8 HSPs)
chr8 (59-171)||(30836208-30836320)
chr8 (1-117)||(38086426-38086544)
chr8 (1-123)||(40930842-40930961)
chr8 (63-116)||(5200556-5200609)
chr8 (58-123)||(10124859-10124925)
chr8 (63-123)||(24200695-24200753)
chr8 (1-134)||(25829276-25829410)
chr8 (85-123)||(22839250-22839288)
[»] chr1 (10 HSPs)
chr1 (58-162)||(43268674-43268778)
chr1 (60-226)||(43460590-43460761)
chr1 (1-134)||(19472786-19472920)
chr1 (1-132)||(8462981-8463113)
chr1 (1-123)||(12172954-12173074)
chr1 (63-116)||(47028937-47028990)
chr1 (1-123)||(26990601-26990721)
chr1 (63-124)||(41955963-41956024)
chr1 (63-123)||(31833895-31833953)
chr1 (63-123)||(46757306-46757365)
[»] chr4 (5 HSPs)
chr4 (85-215)||(16662402-16662536)
chr4 (58-117)||(32183282-32183341)
chr4 (1-117)||(16572074-16572190)
chr4 (58-129)||(25641341-25641413)
chr4 (70-122)||(42390855-42390906)
[»] chr6 (6 HSPs)
chr6 (58-117)||(15859100-15859159)
chr6 (58-123)||(10246910-10246974)
chr6 (63-129)||(33984747-33984813)
chr6 (58-123)||(11546765-11546830)
chr6 (63-123)||(33112791-33112851)
chr6 (58-123)||(34761160-34761225)
[»] chr7 (8 HSPs)
chr7 (58-134)||(49035925-49036001)
chr7 (63-116)||(41702870-41702923)
chr7 (63-123)||(46691922-46691981)
chr7 (63-122)||(33320704-33320763)
chr7 (1-123)||(36615815-36615934)
chr7 (58-117)||(31424842-31424902)
chr7 (85-123)||(22197668-22197706)
chr7 (85-123)||(22240115-22240153)
[»] chr5 (5 HSPs)
chr5 (62-123)||(2292161-2292223)
chr5 (64-129)||(9931877-9931941)
chr5 (66-123)||(819206-819261)
chr5 (58-123)||(10431056-10431121)
chr5 (1-134)||(23172985-23173118)


Alignment Details
Target: chr3 (Bit Score: 136; Significance: 7e-71; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 9358761 - 9358986
Alignment:
Q  1 attattaaccaataagctcgtgcgggaagcactaataagcgcgggtggagnnnnnnncaaagaaggggaaatcggttgctgcacaaacaccggctcgaac 100  Q
    ||||||| |||| |||| |||||| |||| ||||||||||  ||||||||       || ||||||||||||||||||| ||||||||||||||||||||    
T  9358761 attattacccaacaagcccgtgcgagaagtactaataagcttgggtggagaaaaaaacatagaaggggaaatcggttgccgcacaaacaccggctcgaac 9358860  T
Q  101 aaaaacccctttaaaaaccacccacaaaccaaggtgccgcctataaacgtaacaccgtaaacaccaggaaagcacccaaaacnnnnnnnggca-caagca 199  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||       |||| ||||||    
T  9358861 aaaaacccctttaaaaaccacccacaaaccaagatgccgcctataaacgtaacaccgtaaacaccaggaaagcacccaaaaccaaaaaaggcaccaagca 9358960  T
Q  200 atgaggctgaagtatactatcaagaa 225  Q
    ||||||||||||||||||||||||||    
T  9358961 atgaggctgaagtatactatcaagaa 9358986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 47821022 - 47820896
Alignment:
Q  1 attattaaccaataagctcgtgcgggaagcactaataagcgcgggtggagnnnnnnn---caaagaaggggaaatcggttgctgcacaaacaccggctcg 97  Q
    |||||||||||| |||| |||||  || |||||||||||| |||||||||          |||||||||||||||||||||| |||||||||||||||||    
T  47821022 attattaaccaacaagcccgtgcaagacgcactaataagctcgggtggaggaaaaaaatacaaagaaggggaaatcggttgccgcacaaacaccggctcg 47820923  T
Q  98 aacaaaaacccctttaaaaaccaccca 124  Q
    |||||||||||||||||||||||||||    
T  47820922 aacaaaaacccctttaaaaaccaccca 47820896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 28934748 - 28934868
Alignment:
Q  1 attattaaccaataagctcgtgcgggaagcactaataagcgcgggtggagnnnnnnncaaagaaggggaaatcggttgctgcacaaacaccggctcgaac 100  Q
    |||||||||||| |||| |||||  ||||||||||||||| |||||||||        ||| |||||||||||||||||  |||||||||||||||||||    
T  28934748 attattaaccaacaagcccgtgcaagaagcactaataagctcgggtggagaaaaaacaaaacaaggggaaatcggttgc--cacaaacaccggctcgaac 28934845  T
Q  101 aaaaacccctttaaaaaccaccc 123  Q
    ||||||||||| |||||||||||    
T  28934846 aaaaaccccttaaaaaaccaccc 28934868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 58 - 117
Target Start/End: Complemental strand, 28957010 - 28956951
Alignment:
Q  58 caaagaaggggaaatcggttgctgcacaaacaccggctcgaacaaaaacccctttaaaaa 117  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  28957010 caaagaaggggaaatcggttgccacacaaacaccggctcgaacaaaaacccctttaaaaa 28956951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 31525427 - 31525363
Alignment:
Q  58 caaagaaggggaaatcggttgctgcacaaacaccggctcgaacaaaaacccctttaaaaaccaccc 123  Q
    |||| |||||||||||||||||  |||||||| ||||||||||||||||||| |||||||||||||    
T  31525427 caaacaaggggaaatcggttgccacacaaacaacggctcgaacaaaaacccc-ttaaaaaccaccc 31525363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 123
Target Start/End: Complemental strand, 53349460 - 53349401
Alignment:
Q  63 aaggggaaatcggttgctgcacaaacaccggctcgaacaaaaacccctttaaaaaccaccc 123  Q
    ||||| ||||||||||| |||||||||||||||| |||||||||||| |||||||||||||    
T  53349460 aagggaaaatcggttgccgcacaaacaccggctcaaacaaaaacccc-ttaaaaaccaccc 53349401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 8431491 - 8431549
Alignment:
Q  63 aaggggaaatcggttgctgcacaaacaccggctcgaacaaaaacccctttaaaaaccaccc 123  Q
    |||||||||||||||||  || ||||||||||||||||||||||||| |||||||||||||    
T  8431491 aaggggaaatcggttgcaaca-aaacaccggctcgaacaaaaacccc-ttaaaaaccaccc 8431549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 55166896 - 55166955
Alignment:
Q  63 aaggggaaatcggttgctgcacaaacaccggctcgaacaaaaacccctttaaaaaccaccc 123  Q
    ||||||||||||||||| ||||||||   |||||||||||||||||| |||||||||||||    
T  55166896 aaggggaaatcggttgccgcacaaactttggctcgaacaaaaacccc-ttaaaaaccaccc 55166955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 43073120 - 43073178
Alignment:
Q  63 aaggggaaatcggttgctgcacaaacaccggctcgaacaaaaacccctttaaaaaccaccc 123  Q
    |||||||||||||||||   | ||||||||||||||||||||||||| |||||||||||||    
T  43073120 aaggggaaatcggttgcctta-aaacaccggctcgaacaaaaacccc-ttaaaaaccaccc 43073178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 20701209 - 20701139
Alignment:
Q  58 caaagaaggggaaatcggttgctgcacaaacaccggctcgaacaaaaacccctttaaaaaccacccacaaac 129  Q
    |||| |||||||||||| ||||  |||||  || |||||||||||||||||||| |||||||||||| ||||    
T  20701209 caaacaaggggaaatcgattgccacacaactac-ggctcgaacaaaaaccccttaaaaaaccacccaaaaac 20701139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 52076185 - 52076136
Alignment:
Q  1 attattaaccaataagctcgtgcgggaagcactaataagcgcgggtggag 50  Q
    |||| ||||||| |||| |||||| ||||||||||||||| |||||||||    
T  52076185 attactaaccaacaagcccgtgcgagaagcactaataagctcgggtggag 52076136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 1e-57; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 232 - 366
Target Start/End: Complemental strand, 4781974 - 4781836
Alignment:
Q  232 aaattaatataaagaactaaaaaattataagaaatttggaagctatata----atatttgatagaaattaaggacctgtgaggctttgcaaacacccttc 327  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||    
T  4781974 aaattaatataaagaactaaaaaattataagaaatttggaagctatatatataatatttgatagaaattaaggacctgtgaggctttgcaaacacccttc 4781875  T
Q  328 tctgccctatatggataatcattttccaatgcaactcct 366  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  4781874 tctgccgtatatggataatcattatccaatgcaactcct 4781836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 41378272 - 41378332
Alignment:
Q  63 aaggggaaatcggttgctgcacaaacaccggctcgaacaaaaacccctttaaaaaccaccc 123  Q
    |||||||||||||||||  ||||||| |||||||||| |||||||||||||||||||||||    
T  41378272 aaggggaaatcggttgccacacaaactccggctcgaataaaaacccctttaaaaaccaccc 41378332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 63 - 124
Target Start/End: Original strand, 14732414 - 14732474
Alignment:
Q  63 aaggggaaatcggttgctgcacaaacaccggctcgaacaaaaacccctttaaaaaccaccca 124  Q
    ||||||||||||||| | ||| ||| ||| ||||||||||||||||| ||||||||||||||    
T  14732414 aaggggaaatcggttaccgcaaaaataccagctcgaacaaaaacccc-ttaaaaaccaccca 14732474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 124
Target Start/End: Complemental strand, 41419676 - 41419616
Alignment:
Q  63 aaggggaaatcggttgctgcacaaacaccggctcgaacaaaaacccctttaaaaaccaccca 124  Q
    |||||||||||||||||   |  ||||||| |||||||||||||||| ||||||||||||||    
T  41419676 aaggggaaatcggttgccataataacaccgactcgaacaaaaacccc-ttaaaaaccaccca 41419616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 59 - 171
Target Start/End: Original strand, 30836208 - 30836320
Alignment:
Q  59 aaagaaggggaaatcggttgctgcacaaacaccggctcgaacaaaaacccctttaaaaaccacccacaaaccaaggtgccgcctataaacgtaacaccgt 158  Q
    |||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30836208 aaagaaggggaaatcgattgccgcacaaataccggctcgaacaaaaacccctttaaaaaccacccacaaacaaaggtgccgcctataaacgtaacaccgt 30836307  T
Q  159 aaacaccaggaaa 171  Q
    |||||||||||||    
T  30836308 aaacaccaggaaa 30836320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 38086426 - 38086544
Alignment:
Q  1 attattaaccaataagctcgtgcgggaagcactaataagcgcgggtggagnnnnnnn--caaagaaggggaaatcggttgctgcacaaacaccggctcga 98  Q
    ||||||||||||||||| |||||  || |||||||||||| |||||||||         |||||||||| |||||||||||   |||||| | |||||||    
T  38086426 attattaaccaataagcccgtgcaagacgcactaataagctcgggtggagaaaaaaatacaaagaagggaaaatcggttgccatacaaactctggctcga 38086525  T
Q  99 acaaaaacccctttaaaaa 117  Q
    |||||||||||||||||||    
T  38086526 acaaaaacccctttaaaaa 38086544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 40930842 - 40930961
Alignment:
Q  1 attattaaccaataagctcgtgcgggaagcactaataagcgcgggtggagnnnnnnncaaagaaggggaaatcggttgctgcacaaacaccggctcgaac 100  Q
    |||||||||||| |||| |||||  ||||||||||||||| ||||||||        |||| ||||||||||||||||   |||||||| ||||||||||    
T  40930842 attattaaccaacaagcccgtgcaagaagcactaataagctcgggtggaaaaaaatacaaacaaggggaaatcggttgt--cacaaacaacggctcgaac 40930939  T
Q  101 aaaaacccctttaaaaaccaccc 123  Q
    |||||| || |||||||||||||    
T  40930940 aaaaactcc-ttaaaaaccaccc 40930961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 63 - 116
Target Start/End: Original strand, 5200556 - 5200609
Alignment:
Q  63 aaggggaaatcggttgctgcacaaacaccggctcgaacaaaaacccctttaaaa 116  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  5200556 aagggaaaatcggttgccgcacaaacaccggctcgaacaaaaaccccttaaaaa 5200609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 10124925 - 10124859
Alignment:
Q  58 caaagaaggggaaatcggttgctgcacaaa-caccggctcgaacaaaaacccctttaaaaaccaccc 123  Q
    |||| |||||||||||||||||   ||||| |||||||||||||||||||||||| |||||||||||    
T  10124925 caaacaaggggaaatcggttgcctaacaaaacaccggctcgaacaaaaaccccttaaaaaaccaccc 10124859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 24200695 - 24200753
Alignment:
Q  63 aaggggaaatcggttgctgcacaaacaccggctcgaacaaaaacccctttaaaaaccaccc 123  Q
    ||||||||||||||||| ||| |||||||||||||||||||||| |  |||||||||||||    
T  24200695 aaggggaaatcggttgccgcaaaaacaccggctcgaacaaaaacac--ttaaaaaccaccc 24200753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 25829276 - 25829410
Alignment:
Q  1 attattaaccaataagctcgtgcgggaagcactaataagcgcgggtgg--agnnnnnnncaaagaaggggaaatcggttgctgcacaaacaccggctcga 98  Q
    |||||||||||| |||| |||||  ||||||||||||||| |||||||  |        |||| ||||||||||||||| |   | ||||||||||| ||    
T  25829276 attattaaccaacaagcccgtgcaagaagcactaataagctcgggtggaaaaaaaaatacaaacaaggggaaatcggtttccctataaacaccggcttga 25829375  T
Q  99 acaaaaacccctttaaaaaccacccacaaaccaagg 134  Q
    | ||||||||| |||||||||||||| |||| ||||    
T  25829376 ataaaaacccc-ttaaaaaccacccataaacaaagg 25829410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 123
Target Start/End: Complemental strand, 22839288 - 22839250
Alignment:
Q  85 aaacaccggctcgaacaaaaacccctttaaaaaccaccc 123  Q
    ||||| ||||||||||||||| |||||||||||||||||    
T  22839288 aaacatcggctcgaacaaaaatccctttaaaaaccaccc 22839250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 8e-43; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 58 - 162
Target Start/End: Original strand, 43268674 - 43268778
Alignment:
Q  58 caaagaaggggaaatcggttgctgcacaaacaccggctcgaacaaaaacccctttaaaaaccacccacaaaccaaggtgccgcctataaacgtaacaccg 157  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |    
T  43268674 caaagaaggggaaatcggttgccgcacaaacaccggctcgaacaaaaacccctttaaaaaccacccacaaacaaaggtgccgtctataaacgtaacactg 43268773  T
Q  158 taaac 162  Q
    |||||    
T  43268774 taaac 43268778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 60 - 226
Target Start/End: Complemental strand, 43460761 - 43460590
Alignment:
Q  60 aagaaggggaaatcggttgctgcacaaa-caccggctcgaacaaaaacccctttaaaaaccacccacaaaccaaggtgccgcct-ataaacgta--acac 155  Q
    ||||||||||||||||||||   ||||| ||| | |||||||||||||||||| ||||||||||  ||||| |||||||||||| | |||||||  ||||    
T  43460761 aagaaggggaaatcggttgcgatacaaaacactgactcgaacaaaaaccccttcaaaaaccaccttcaaacaaaggtgccgcctaaaaaacgtaacacac 43460662  T
Q  156 cgtaaacaccaggaaagcacccaaaacnnnnnnnggca-caagcaatgaggctgaagtatactatcaagaaa 226  Q
       ||||||||||||||||||||||||       | || |||||||||||||||||||||||||||| ||||    
T  43460661 aaaaaacaccaggaaagcacccaaaaccaaacgagacaccaagcaatgaggctgaagtatactatcatgaaa 43460590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 19472920 - 19472786
Alignment:
Q  1 attattaaccaataagctcgtgcgggaagcactaataagcgcgggtggagnnnnnnn-caaagaaggggaaatcggttgctgcacaaacaccggctcgaa 99  Q
    |||||||||||| |||| |||||  || |||||||||||| |||||||||        |||||||||||||||| |||||   |||||| ||||||||||    
T  19472920 attattaaccaacaagcccgtgcaagacgcactaataagctcgggtggagaaaaaatacaaagaaggggaaatcagttgccatacaaactccggctcgaa 19472821  T
Q  100 caaaaacccctttaaaaaccacccacaaaccaagg 134  Q
    |||||| |||||||||||||||||| |||| ||||    
T  19472820 caaaaatccctttaaaaaccacccataaactaagg 19472786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 8462981 - 8463113
Alignment:
Q  1 attattaaccaataagctcgtgcgggaagcactaataagcgcgggtggagnnnnnnn-caaagaaggggaaatcggttgctgcacaaacaccggctcgaa 99  Q
    |||||||||||| ||||||||||  ||||||||||| ||| |||||||||        || | ||||| |||||||||||  || ||||  |||||||||    
T  8462981 attattaaccaacaagctcgtgcaagaagcactaattagctcgggtggagaaaaaatacatacaagggaaaatcggttgccacaaaaacgtcggctcgaa 8463080  T
Q  100 caaaaacccctttaaaaaccacccacaaaccaa 132  Q
    |||||||||||| |||||||||||| |||||||    
T  8463081 caaaaaccccttaaaaaaccacccaaaaaccaa 8463113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 12173074 - 12172954
Alignment:
Q  1 attattaaccaataagctcgtgcgggaagcactaataagcgcgggtggagnnnnnnncaaagaaggggaaatcggttgctgcacaaacaccggctcgaac 100  Q
    |||||||||||| |||| |||||  |||||||||||||||  |||||||        |||| |||||||||||||||||  |||||||| | ||||||||    
T  12173074 attattaaccaacaagcccgtgcaagaagcactaataagcttgggtgga-aaaaaaacaaacaaggggaaatcggttgccacacaaacatcagctcgaac 12172976  T
Q  101 aaaaacccctttaaaaaccaccc 123  Q
    ||||||||| |||||||||||||    
T  12172975 aaaaacccc-ttaaaaaccaccc 12172954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 63 - 116
Target Start/End: Complemental strand, 47028990 - 47028937
Alignment:
Q  63 aaggggaaatcggttgctgcacaaacaccggctcgaacaaaaacccctttaaaa 116  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||    
T  47028990 aaggggaaatcggttgccgcaaaaacaccggctcgaacaaaaaccccttaaaaa 47028937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 26990721 - 26990601
Alignment:
Q  1 attattaaccaataagctcgtgcgggaagcactaataagcgcgggtggagnnnnnnncaaagaaggggaaatcggttgctgcacaaacaccggctcgaac 100  Q
    ||||||||||||||||| |||||  |||||||||||||||  |||||||        || | ||||| |||||| |||| |||||| ||||||||| |||    
T  26990721 attattaaccaataagcccgtgcaagaagcactaataagcttgggtgga-aaaaaaacatacaagggaaaatcgattgccgcacaagcaccggctcaaac 26990623  T
Q  101 aaaaacccctttaaaaaccaccc 123  Q
    ||||| ||| |||||||||||||    
T  26990622 aaaaatccc-ttaaaaaccaccc 26990601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 63 - 124
Target Start/End: Original strand, 41955963 - 41956024
Alignment:
Q  63 aaggggaaatcggttgctgcacaaacaccggctcgaacaaaaacccctttaaaaaccaccca 124  Q
    |||||||||||||||||   |  |||||||||||||||||||| ||||| ||||||||||||    
T  41955963 aaggggaaatcggttgccataataacaccggctcgaacaaaaatcccttaaaaaaccaccca 41956024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 123
Target Start/End: Complemental strand, 31833953 - 31833895
Alignment:
Q  63 aaggggaaatcggttgctgcaca-aacaccggctcgaacaaaaacccctttaaaaaccaccc 123  Q
    ||||| |||||||||||  |||| |||||||||||||||||||||||| |||||||||||||    
T  31833953 aagggaaaatcggttgc--cacataacaccggctcgaacaaaaacccc-ttaaaaaccaccc 31833895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 123
Target Start/End: Complemental strand, 46757365 - 46757306
Alignment:
Q  63 aaggggaaatcggttgctgcacaaacaccggctcgaacaaaaacccctttaaaaaccaccc 123  Q
    |||||||||||| ||||  ||  |||||| ||||||||||||| |||||||||||||||||    
T  46757365 aaggggaaatcgattgccacaataacaccagctcgaacaaaaa-ccctttaaaaaccaccc 46757306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 85 - 215
Target Start/End: Original strand, 16662402 - 16662536
Alignment:
Q  85 aaacaccggctcgaacaaaaacccctttaaaaaccacccacaaaccaaggtgccgcctat-aaacgtaa--caccgtaaacaccaggaaagcacccaaaa 181  Q
    |||||| |||||| ||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||  |||   |||||||| |||| |||||||||    
T  16662402 aaacactggctcgtacaaaaacccctttaaaaaccaccctcaaacaaaggtgccgcctataaaacgtaaagcacaaaaaacaccatgaaaacacccaaaa 16662501  T
Q  182 cnnnnnnnggca-caagcaatgaggctgaagtata 215  Q
    |       |||| ||||||||||||||||||||||    
T  16662502 ccaaacgaggcaccaagcaatgaggctgaagtata 16662536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 117
Target Start/End: Complemental strand, 32183341 - 32183282
Alignment:
Q  58 caaagaaggggaaatcggttgctgcacaaacaccggctcgaacaaaaacccctttaaaaa 117  Q
    ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||    
T  32183341 caaagaaggggaaatcggttgccatacaaacaccggctcgaacaaaaacccctttaaaaa 32183282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 16572190 - 16572074
Alignment:
Q  1 attattaaccaataagctcgtgcgggaagcactaataagcgcgggtggagnnnnnnncaa-agaaggggaaatcggttgctgcacaaacaccggctcgaa 99  Q
    |||||||||||| |||| |||||| || |||||||||||| ||||||||         || | ||||||||||||||||| ||| ||||||||| |||||    
T  16572190 attattaaccaacaagcccgtgcgagatgcactaataagctcgggtggaaaaaaaataaatacaaggggaaatcggttgccgcaaaaacaccggttcgaa 16572091  T
Q  100 caaaaacccctttaaaaa 117  Q
    | ||||||||||||||||    
T  16572090 c-aaaacccctttaaaaa 16572074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 25641341 - 25641413
Alignment:
Q  58 caaagaaggggaaatcggttgctgcacaaacaccggctcgaacaaaaaccccttt-aaaaaccacccacaaac 129  Q
    ||||||||||||||| ||||||   || |||| |||||||||||||||||| ||| |||||||||||| ||||    
T  25641341 caaagaaggggaaattggttgccatactaacatcggctcgaacaaaaacccttttaaaaaaccacccataaac 25641413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 42390855 - 42390906
Alignment:
Q  70 aatcggttgctgcacaaacaccggctcgaacaaaaacccctttaaaaaccacc 122  Q
    |||||||||| ||  |||||||||||| |||||||||||| ||||||||||||    
T  42390855 aatcggttgccgctaaaacaccggctcaaacaaaaacccc-ttaaaaaccacc 42390906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 117
Target Start/End: Complemental strand, 15859159 - 15859100
Alignment:
Q  58 caaagaaggggaaatcggttgctgcacaaacaccggctcgaacaaaaacccctttaaaaa 117  Q
    ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||    
T  15859159 caaagaaggggaaatcggttgccaaacaaacaccggctcgaacaaaaacccctttaaaaa 15859100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 10246974 - 10246910
Alignment:
Q  58 caaagaaggggaaatcggttgctgcacaaacaccggctcgaacaaaaacccctttaaaaaccaccc 123  Q
    |||||||||| ||||||||||   ||||| ||||||||||||||||||||||||||||||||||||    
T  10246974 caaagaagggaaaatcggttgtcacacaa-caccggctcgaacaaaaacccctttaaaaaccaccc 10246910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 33984813 - 33984747
Alignment:
Q  63 aaggggaaatcggttgctgcacaaacaccggctcgaacaaaaacccctttaaaaaccacccacaaac 129  Q
    |||||||||||||||||   |||||||| || ||||||||||||||||| |||||||||||| ||||    
T  33984813 aaggggaaatcggttgccatacaaacactggttcgaacaaaaaccccttcaaaaaccacccataaac 33984747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 11546830 - 11546765
Alignment:
Q  58 caaagaaggggaaatcggttgctgcacaaacaccggctcgaacaaaaacccctttaaaaaccaccc 123  Q
    ||||||||| |||||||||||    |||||||||||||||||||||||| |||| |||||| ||||    
T  11546830 caaagaaggagaaatcggttgtcatacaaacaccggctcgaacaaaaactccttaaaaaactaccc 11546765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 33112791 - 33112851
Alignment:
Q  63 aaggggaaatcggttgctgcacaaacaccggctcgaacaaaaacccctttaaaaaccaccc 123  Q
    |||||||||||||||||   ||||||   |||||||||||||||||||| |||||||||||    
T  33112791 aaggggaaatcggttgccatacaaactttggctcgaacaaaaaccccttaaaaaaccaccc 33112851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 34761225 - 34761160
Alignment:
Q  58 caaagaaggggaaatcggttgctgcacaaacaccggctcgaacaaaaacccctttaaaaaccaccc 123  Q
    ||||||||  |||||||||||    |||||||||| ||||||||||||| |||| |||||||||||    
T  34761225 caaagaagaagaaatcggttgtcatacaaacaccgactcgaacaaaaactccttaaaaaaccaccc 34761160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 49035925 - 49036001
Alignment:
Q  58 caaagaaggggaaatcggttgctgcacaaacaccggctcgaacaaaaacccctttaaaaaccacccacaaaccaagg 134  Q
    |||| |||||||||||||||||  || ||||||||| ||||||||||||||||| |||||||||||| |||| ||||    
T  49035925 caaacaaggggaaatcggttgccacataaacaccggttcgaacaaaaaccccttaaaaaaccacccataaacaaagg 49036001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 63 - 116
Target Start/End: Complemental strand, 41702923 - 41702870
Alignment:
Q  63 aaggggaaatcggttgctgcacaaacaccggctcgaacaaaaacccctttaaaa 116  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||| ||||    
T  41702923 aaggggaagtcggttgccgcacaaacaccggctcgaacaaaaaccccttaaaaa 41702870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 46691922 - 46691981
Alignment:
Q  63 aaggggaaatcggttgctgcacaaacaccggctcgaacaaaaacccctttaaaaaccaccc 123  Q
    |||||||||||||||||  || ||||||||||||||||||||||||| |||||||||||||    
T  46691922 aaggggaaatcggttgccacataaacaccggctcgaacaaaaacccc-ttaaaaaccaccc 46691981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 122
Target Start/End: Complemental strand, 33320763 - 33320704
Alignment:
Q  63 aaggggaaatcggttgctgcacaaacaccggctcgaacaaaaacccctttaaaaaccacc 122  Q
    |||||||||| ||||||   |||||||||||||||||||||| |||||| ||||||||||    
T  33320763 aaggggaaattggttgccttacaaacaccggctcgaacaaaacccccttaaaaaaccacc 33320704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 36615815 - 36615934
Alignment:
Q  1 attattaaccaataagctcgtgcgggaagcactaataagcgcgggtggagnnnnnnncaaagaaggggaaatcggttgctgcacaaacaccggctcgaac 100  Q
    ||||||| |||| |||| |||||  ||||||||||||||| ||||||||         ||| |||||||||||||||||  ||||||| || ||||||||    
T  36615815 attattacccaacaagcccgtgcaagaagcactaataagctcgggtggaaaaaaaca-aaacaaggggaaatcggttgc--cacaaactccagctcgaac 36615911  T
Q  101 aaaaacccctttaaaaaccaccc 123  Q
    |||||||| || |||||||||||    
T  36615912 aaaaaccctttaaaaaaccaccc 36615934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 117
Target Start/End: Original strand, 31424842 - 31424902
Alignment:
Q  58 caaagaaggggaaatcggttgctgcac-aaacaccggctcgaacaaaaacccctttaaaaa 117  Q
    ||||||||||||||||||||||    | |||||||||||||| ||||||||||||||||||    
T  31424842 caaagaaggggaaatcggttgccattcgaaacaccggctcgatcaaaaacccctttaaaaa 31424902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 123
Target Start/End: Complemental strand, 22197706 - 22197668
Alignment:
Q  85 aaacaccggctcgaacaaaaacccctttaaaaaccaccc 123  Q
    |||||||| |||||||||||||||||| |||||||||||    
T  22197706 aaacaccgtctcgaacaaaaaccccttaaaaaaccaccc 22197668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 123
Target Start/End: Original strand, 22240115 - 22240153
Alignment:
Q  85 aaacaccggctcgaacaaaaacccctttaaaaaccaccc 123  Q
    |||||||| |||||||||||||||||| |||||||||||    
T  22240115 aaacaccgtctcgaacaaaaaccccttaaaaaaccaccc 22240153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 2292223 - 2292161
Alignment:
Q  62 gaaggggaaatcggttgctgcacaaa-caccggctcgaacaaaaacccctttaaaaaccaccc 123  Q
    ||||||||||||||||||   ||||| |||||||||||||||||||||||| |||||||||||    
T  2292223 gaaggggaaatcggttgcctaacaaaacaccggctcgaacaaaaaccccttaaaaaaccaccc 2292161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 129
Target Start/End: Original strand, 9931877 - 9931941
Alignment:
Q  64 aggggaaatcggttgctgcacaaacaccggctcgaacaaaaacccctttaaaaaccacccacaaac 129  Q
    |||||||||||||||| ||||||||||| |||||||||||||| || | |||||||||||| ||||    
T  9931877 aggggaaatcggttgccgcacaaacaccagctcgaacaaaaacacc-tcaaaaaccacccaaaaac 9931941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 819206 - 819261
Alignment:
Q  66 gggaaatcggttgctgcacaaacaccggctcgaacaaaaacccctttaaaaaccaccc 123  Q
    ||||||||||||||  ||||||||||  |||||||||||||||||| |||||||||||    
T  819206 gggaaatcggttgc--cacaaacaccaactcgaacaaaaaccccttaaaaaaccaccc 819261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 10431121 - 10431056
Alignment:
Q  58 caaagaaggggaaatcggttgctgcacaaacaccggctcgaacaaaaacccctttaaaaaccaccc 123  Q
    |||| |||| ||||||||||||  ||||||||||| |||||||||||||| | | |||||||||||    
T  10431121 caaacaaggagaaatcggttgccacacaaacaccgactcgaacaaaaacctcataaaaaaccaccc 10431056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 23172985 - 23173118
Alignment:
Q  1 attattaaccaataagctcgtgcgggaagcactaataagcgcgggtggagnnnnnnn-caaagaaggggaaatcggttgctgcacaaacaccggctcgaa 99  Q
    |||||||||||| |||| |||||  ||||||||||||||| ||||||||         |||| |||| |||||| |||||   | |||||||||||||||    
T  23172985 attattaaccaacaagcccgtgcaagaagcactaataagctcgggtggaaaaaaaatacaaacaaggagaaatcagttgccctataaacaccggctcgaa 23173084  T
Q  100 caaaaacccctttaaaaaccacccacaaaccaagg 134  Q
    | |||||||| |||||||||||||| |||| ||||    
T  23173085 c-aaaacccccttaaaaaccacccataaacaaagg 23173118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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