View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19565_low_7 (Length: 289)
Name: NF19565_low_7
Description: NF19565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19565_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 33413258 - 33413533
Alignment:
| Q |
1 |
tgttgatgaacgatatcctttcatgtcacttcttttgaatggcaagcacatttttgtatatggtcatcactacttacagcattgtacctaggaccaacta |
100 |
Q |
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| T |
33413258 |
tgttgatgaacgatatcctttcatgtcacttcttttgaatggcaagcacatttttgtatatggtca---ctacttacaacattgtacctaagaccaacta |
33413354 |
T |
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| Q |
101 |
ctcattgaaccttggagctgctgcaagtgtttgtggtgtcatcaacggatcaatgactattgcacatgtttttgcttctatttattttagtgtgtgatcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33413355 |
ctcattgaaccttggagctgctgcaagtgtttgtggtgtcatcaacggatcaatgactattgcacatgtttttgcttctatttattttagtgtgtgatcg |
33413454 |
T |
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| Q |
201 |
aactgattgtgtctaagacctatcatattcagtgccattgttcttctaattgtaaacatgatgtatgcaatggcctatg |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33413455 |
aactgattgtgtctaagacctatcatattcagtgccattgttcttctaattgtaaacatgatgtatgcaatggcctatg |
33413533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 33420398 - 33420677
Alignment:
| Q |
1 |
tgttgatgaacgatatcctttcatgtcacttcttttgaa--tggcaagcacatttttgtatatggtcatcactacttacagcattgtacctaggacc--- |
95 |
Q |
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|||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||| |||| |
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| T |
33420398 |
tgttgatgaaatatatcatttcatgtcacttcttttgaacttggcaagcacatttttgtatatggtcg---ctacttacatcattgtacctatgaccgga |
33420494 |
T |
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| Q |
96 |
aactactcattgaaccttggagctgctgcaagtgtttgtggtgtcatcaacggatcaatgactattgcacatgtttttgcttctatttattttagtgtgt |
195 |
Q |
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| T |
33420495 |
aactactcattgaaccttggagctgctgcaagtgtttgtggtgttgtcgtcggatcaatggctattgcacaagtttttgcttctgtttatttcagtatgt |
33420594 |
T |
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| Q |
196 |
gatcgaactgattgtgtctaagacctatcatattcagtgccattgttcttctaattgtaaacatgatgtatgcaatggcctat |
278 |
Q |
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| T |
33420595 |
ggtcgaaccgatcgtgtctaagacttatcatattcagtgttattgttcatctaattgtaaacatcaagtatgcaatggcctat |
33420677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 5 - 279
Target Start/End: Complemental strand, 28812284 - 28812008
Alignment:
| Q |
5 |
gatgaacgatatcctttcatgtcacttcttttgaa--tggcaagcacatttttgtatatggtcatcactacttacagcattgtacctaggac---caact |
99 |
Q |
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|||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| | ||||||||| | | ||| | |
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| T |
28812284 |
gatgaaagatatcatttcatgtcacttcttttgaacttggcaagcacatttttgtatatggtcaa---tacttacatcgttgtacctacggctgacaatt |
28812188 |
T |
|
| Q |
100 |
actcattgaaccttggagctgctgcaagtgtttgtggtgtcatcaacggatcaatgactattgcacatgtttttgcttctatttattttagtgtgtgatc |
199 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| ||| |||||||||| || ||||||| |||||||||||| ||||||| |||| ||| || |
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| T |
28812187 |
actcattgaaccttggagctgctgcaagtgtttgcggtgtcgtcatcggatcaatggctgttgcacaggtttttgcttctgtttatttcagtgcgtggtc |
28812088 |
T |
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| Q |
200 |
gaactgattgtgtctaagacctatcatattcagtgccattgttcttctaattgtaaacatgatgtatgcaatggcctatg |
279 |
Q |
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|||| ||| || |||||||||| ||||||||||| ||||||||||| | |||| |||||| ||||||||| ||||||||| |
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| T |
28812087 |
gaaccgatcgtatctaagacctctcatattcagtaccattgttcttatgattggaaacatcatgtatgcattggcctatg |
28812008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 33491683 - 33491796
Alignment:
| Q |
1 |
tgttgatgaacgatatcctttcatgtcacttcttttgaa--tggcaagcacatttttgtatatggtcatcactacttacagcattgtacctaggac---c |
95 |
Q |
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|||||||||| |||||| ||||||| ||||||||||||| || ||||||||||||||||||||| |||||| ||||| ||||||||||||||| | |
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| T |
33491683 |
tgttgatgaaagatatcatttcatgccacttcttttgaacctgacaagcacatttttgtatatgg---tcactatttacaacattgtacctaggaccgac |
33491779 |
T |
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| Q |
96 |
aactactcattgaacct |
112 |
Q |
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||||||||||||||||| |
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| T |
33491780 |
aactactcattgaacct |
33491796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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