View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19566_high_6 (Length: 259)
Name: NF19566_high_6
Description: NF19566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19566_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 50774332 - 50774552
Alignment:
| Q |
19 |
aatggagggagtactatagagggtggattacaaagcaccttacaaaacaagaccacacgtctaaaaacacttgataatttatggcttttacttaagaggc |
118 |
Q |
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| T |
50774332 |
aatggagagagtactatagagggtggattacaaagcaccttacaaaacaagaccac--gtctaaaaacacttgataatttatggcttttacttaagaggc |
50774429 |
T |
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| Q |
119 |
caagagcgaaaaatcctacacaaaagccaaataaaataacgtaacctactaatatttgtttatcaaaacaaacatagttaatatataaattattctacgt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
50774430 |
caagagcgaaaaatcctacacaaaagccaaataaaataacgtaacctactaatatttgtttatcaaaacaaacatagttaatgtataaattattctacgt |
50774529 |
T |
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| Q |
219 |
taaactatgttacatgtcaatca |
241 |
Q |
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||||||||||||||||||||||| |
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| T |
50774530 |
taaactatgttacatgtcaatca |
50774552 |
T |
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