View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19566_low_1 (Length: 706)
Name: NF19566_low_1
Description: NF19566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19566_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 255 - 702
Target Start/End: Complemental strand, 45767682 - 45767234
Alignment:
| Q |
255 |
taaaattattgtttttcactttatatggaaatatattattcatgatggaccaaagtaataatttgttgtttgagatccatgcttgtatgcttg-atagat |
353 |
Q |
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| T |
45767682 |
taaaattatttcttttcactttatatgtaaatatattattcatgatggaccaaagtaataatttgttgtttgagatccatgcttgtatgcttggatagat |
45767583 |
T |
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| Q |
354 |
atagttggataataattagaattaattcaatattgtttatgattgctaagttagttatgatcagtgagaagttatatatagtggattctacaatcattgt |
453 |
Q |
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| T |
45767582 |
atagttggataataattagaattaatacaatattgttaatgattgctaagttagttatgatcagtgagaagttatatatagtgtattctacaatcattgt |
45767483 |
T |
|
| Q |
454 |
atatatcaacttcttcattctattaattctgaaatatgaaatgtgtacacattagtcctgagtcctaactcgactaatagagtaactaacactaccagga |
553 |
Q |
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| T |
45767482 |
at----caacttcttcattctattaattctgaaatatgaaatgtgtacacattagtcctgagtcctaactcgactaatagagtaactaacactaccagga |
45767387 |
T |
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| Q |
554 |
ttataactattaatcataaacagaacatttgtttaaagtcagtgtac----tattactcactatttggagatgtccaagagtcatttcgtgtgactcaac |
649 |
Q |
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| T |
45767386 |
ttataactattaatcataaacagaacatttgtttaaagtcagtgtactatttattactcactatttggagatgtccaagagtcattttgtgtgactcaac |
45767287 |
T |
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| Q |
650 |
atttcgtactaaatagtaccctgtcatgttgtcgtatatattgatgatgtcca |
702 |
Q |
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| T |
45767286 |
atttcgtactaaatagtaccctgtcatgttgtcgtatatattgatgatgtcca |
45767234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 45767998 - 45767770
Alignment:
| Q |
1 |
ttgtagtgtattctattctatattgttcacacgatcaaaagttactttgttgacttgatgttacaagtatgatgatttgtaaatcatgaaatggtttgac |
100 |
Q |
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||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
45767998 |
ttgtagtgtattctattatctattgttcacacgatcaaaagttactttgttgacttgatgttacaagtatgatgatttgtaaatcatgaattggtttgac |
45767899 |
T |
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| Q |
101 |
tattttgcttagtaataatgtgcatggttcgaattgtgactcacatggaattaatatctagccc---cttcataccaacggataaggttaccctaaagag |
197 |
Q |
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| T |
45767898 |
tattttgcttagtaataatgtgcatggtttgaattgtgactcacatggaattaatatctagccccttcttcataccaacggataaggttaccctaaagag |
45767799 |
T |
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| Q |
198 |
tttttcttcaaagtgactaagttatactt |
226 |
Q |
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| T |
45767798 |
tttttcttcaaagtgactaagttatactt |
45767770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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