View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19566_low_2 (Length: 649)

Name: NF19566_low_2
Description: NF19566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19566_low_2
NF19566_low_2
[»] chr2 (2 HSPs)
chr2 (9-632)||(4422579-4423205)
chr2 (156-203)||(11279898-11279946)
[»] chr3 (3 HSPs)
chr3 (225-324)||(25543476-25543576)
chr3 (247-334)||(27177312-27177399)
chr3 (250-334)||(6588306-6588391)
[»] chr8 (5 HSPs)
chr8 (251-335)||(8238740-8238825)
chr8 (294-352)||(29204667-29204725)
chr8 (294-339)||(38924462-38924507)
chr8 (311-339)||(8238831-8238859)
chr8 (205-269)||(21150239-21150303)
[»] chr7 (6 HSPs)
chr7 (186-267)||(31726691-31726774)
chr7 (199-334)||(101246-101384)
chr7 (186-267)||(16780812-16780895)
chr7 (294-339)||(101266-101311)
chr7 (249-321)||(25690720-25690793)
chr7 (294-334)||(34953929-34953969)
[»] chr5 (1 HSPs)
chr5 (235-272)||(18398606-18398643)


Alignment Details
Target: chr2 (Bit Score: 501; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 9 - 632
Target Start/End: Original strand, 4422579 - 4423205
Alignment:
Q  9 gataatactaacaactttcatagcattgacatggctaattccaaattgcatggtttgacatcaaaatcccaatggaatatacttctcattctcatctcat 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4422579 gataatactaacaactttcatagcattgacatggctaattccaaattgcgtggtttgacatcaaaatcccaatggaatatacttctcattctcatctcat 4422678  T
Q  109 ggtcatgggtgtagtattttcgtattgggccttagtaaagactaactgaaaactgctcttatccttttaaaattgtccatttccttgattcaacgagagt 208  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4422679 ggtcatgggggtagtattttcgtattgggccttagtaacgactaactgaaaactgctcttatccttttaaaattgttcatttccttgattcaacgagagt 4422778  T
Q  209 taact--cactctacatgtttcagcagtagttaacttacaccgacacttttaagatcggttgattcgacctaaaaa-aggttgagccaatctaaaaagtg 305  Q
    |||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  | ||||||| ||||||||||||    
T  4422779 taactcacactctacatatttcagcagtagttaacttacaccgacacttttaagatcggttgattcgacttaaaaagtgattgagccgatctaaaaagtg 4422878  T
Q  306 acagcgtgagttaactaccactgaaaaataccgaacctaatttaactattgttggaa-nnnnnnnnagcaattttgaaagggagaaaagtcatttcctaa 404  Q
    || |||||||||||||| ||||||||||||||||||||||||||||| |||||||||         ||||||||||||||||||||||||||||||| ||    
T  4422879 acggcgtgagttaactatcactgaaaaataccgaacctaatttaactgttgttggaatttttttttagcaattttgaaagggagaaaagtcatttccaaa 4422978  T
Q  405 ctaacttaggttaaagaaataattctattttcaatatttatttaaacggctgagatttccttatctcaccctttatatttgtgtaacaccacacatgagt 504  Q
    ||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4422979 ctaactcgggttaaagaaataattctattttcaatatttatttaaacggttgagatttccttatctcaccctttatatttgtgt-acaccacacatgagt 4423077  T
Q  505 cctaaagtttactttttggatatcataatttgtcttagagtgtgtttttaataatatcaaataataatatcaaaattaacagatgaattactccactatc 604  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4423078 cctaaagtttactttttggatatcataatttgtcttagagtgtgtttttaataatattaaataataatatcaaaattaacagatgaattactccactatc 4423177  T
Q  605 taaatctgtagaattggtgtgttgttca 632  Q
    ||||||||||||||||||||||||||||    
T  4423178 taaatctgtagaattggtgtgttgttca 4423205  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 11279898 - 11279946
Alignment:
Q  156 gaaaactgctcttatcctttt-aaaattgtccatttccttgattcaacg 203  Q
    ||||| ||||||| ||||||| |||||| ||||||||||||||||||||    
T  11279898 gaaaattgctcttctcctttttaaaattatccatttccttgattcaacg 11279946  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 225 - 324
Target Start/End: Complemental strand, 25543576 - 25543476
Alignment:
Q  225 tttcagcagtagttaacttacaccgacactttt-aagatcggttgattcgacctaaaaaaggttgagccaatctaaaaagtgacagcgtgagttaactac 323  Q
    ||||||| |||||||||| |||| ||||||||| ||||||| |||| ||||| |||||  | ||||||| |||||||||| | ||| |||||||||||||    
T  25543576 tttcagcggtagttaactcacacggacactttttaagatcgattgactcgacttaaaagtgtttgagccgatctaaaaagggtcagtgtgagttaactac 25543477  T
Q  324 c 324  Q
    |    
T  25543476 c 25543476  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 247 - 334
Target Start/End: Complemental strand, 27177399 - 27177312
Alignment:
Q  247 ccgacacttttaagatcggttgattcgacctaaaaaa-ggttgagccaatctaaaaagtgacagcgtgagttaactaccactgaaaaat 334  Q
    |||||||||||||||||||||||  | || ||||||| | |||| || |||||||||||| ||| ||||||| ||||||||||||||||    
T  27177399 ccgacacttttaagatcggttgacccaacttaaaaaatgattgaaccgatctaaaaagtgtcagtgtgagtt-actaccactgaaaaat 27177312  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 250 - 334
Target Start/End: Complemental strand, 6588391 - 6588306
Alignment:
Q  250 acacttttaagatcggttgattcgacctaaaaaaggtt-gagccaatctaaaaagtgacagcgtgagttaactaccactgaaaaat 334  Q
    ||||||||||||||||||||  |||| ||||| | ||| || || ||| |||||||| |||||||||||||||||  |||||||||    
T  6588391 acacttttaagatcggttgacccgacttaaaacatgtttgaaccgatcaaaaaagtgtcagcgtgagttaactactgctgaaaaat 6588306  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 251 - 335
Target Start/End: Complemental strand, 8238825 - 8238740
Alignment:
Q  251 cacttttaagatcggttgattcgacctaaaaaagg--ttgagccaatctaaaaagtgacagcgtgagttaactaccactgaaaaata 335  Q
    |||||||||||||||||||| |||| ||||||||   |||| |  |||||||||||| |||||||||||||||||| ||||||||||    
T  8238825 cacttttaagatcggttgatccgac-taaaaaagtgattgaactgatctaaaaagtgtcagcgtgagttaactaccgctgaaaaata 8238740  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 294 - 352
Target Start/End: Original strand, 29204667 - 29204725
Alignment:
Q  294 atctaaaaagtgacagcgtgagttaactaccactgaaaaataccgaacctaatttaact 352  Q
    |||| |||||||||||||| ||||||||  | |||||||||||||||| ||| ||||||    
T  29204667 atcttaaaagtgacagcgtaagttaacttacgctgaaaaataccgaacataagttaact 29204725  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 38924462 - 38924507
Alignment:
Q  294 atctaaaaagtgacagcgtgagttaactaccactgaaaaataccga 339  Q
    |||| ||||||||||||||||||||||| || ||||||||| ||||    
T  38924462 atcttaaaagtgacagcgtgagttaacttccgctgaaaaatgccga 38924507  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 311 - 339
Target Start/End: Original strand, 8238831 - 8238859
Alignment:
Q  311 gtgagttaactaccactgaaaaataccga 339  Q
    |||||||||||||||||||||||||||||    
T  8238831 gtgagttaactaccactgaaaaataccga 8238859  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 21150303 - 21150239
Alignment:
Q  205 gagttaactcactctacatgtttcagcagtagttaacttacaccgacacttttaagatcggttga 269  Q
    |||||||||||||| | || ||||| |   ||||||||||| | |||||||||||||||||||||    
T  21150303 gagttaactcactcgatatttttcaacgtgagttaacttacgctgacacttttaagatcggttga 21150239  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 267
Target Start/End: Complemental strand, 31726774 - 31726691
Alignment:
Q  186 catttccttgattcaacgagagttaactcactct--acatgtttcagcagtagttaacttacaccgacacttttaagatcggtt 267  Q
    ||||||||| |||||||| |||||||||||| ||  |||| ||||||||  |||||||||||||  ||||||||||| ||||||    
T  31726774 catttccttcattcaacgtgagttaactcacgctcgacatttttcagcataagttaacttacactaacacttttaagttcggtt 31726691  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 199 - 334
Target Start/End: Original strand, 101246 - 101384
Alignment:
Q  199 caacgagagttaactca--ctctacatgtttcagcagtagttaacttacaccgacacttttaagatcggttgattcgacctaaaaa-aggttgagccaat 295  Q
    ||||| |||||||||||  |||  ||| ||||||| |||||||||| || | |||||||||||||||||||||   ||| ||||||  | |||| |  ||    
T  101246 caacgggagttaactcatgctcggcatttttcagcggtagttaactcacgctgacacttttaagatcggttgacctgacttaaaaagtgattgaactgat 101345  T
Q  296 ctaaaaagtgacagcgtgagttaactaccactgaaaaat 334  Q
    ||||||||||  ||| ||||||||||||| |||||||||    
T  101346 ctaaaaagtgctagcatgagttaactaccgctgaaaaat 101384  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 186 - 267
Target Start/End: Complemental strand, 16780895 - 16780812
Alignment:
Q  186 catttccttgattcaacgagagttaactca--ctctacatgtttcagcagtagttaacttacaccgacacttttaagatcggtt 267  Q
    ||||||||| |||||||  |||||||||||  ||| |||| ||||||||  ||||||||||| | | |||||||||||||||||    
T  16780895 catttccttaattcaacatgagttaactcatgctcgacatttttcagcatgagttaacttacgcgggcacttttaagatcggtt 16780812  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 339
Target Start/End: Complemental strand, 101311 - 101266
Alignment:
Q  294 atctaaaaagtgacagcgtgagttaactaccactgaaaaataccga 339  Q
    |||| ||||||| |||||||||||||||||| ||||||||| ||||    
T  101311 atcttaaaagtgtcagcgtgagttaactaccgctgaaaaatgccga 101266  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 321
Target Start/End: Complemental strand, 25690793 - 25690720
Alignment:
Q  249 gacacttttaagatcggttgattcgacctaaaaaagg-ttgagccaatctaaaaagtgacagcgtgagttaact 321  Q
    |||||||||||||||||||||  || | ||||||  | |||| || |||||||||||| |||||||||||||||    
T  25690793 gacacttttaagatcggttgaaccggcttaaaaagtgattgaaccgatctaaaaagtgtcagcgtgagttaact 25690720  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 294 - 334
Target Start/End: Original strand, 34953929 - 34953969
Alignment:
Q  294 atctaaaaagtgacagcgtgagttaactaccactgaaaaat 334  Q
    |||| ||||||| |||||||||||||||||| |||||||||    
T  34953929 atcttaaaagtgtcagcgtgagttaactaccgctgaaaaat 34953969  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 272
Target Start/End: Complemental strand, 18398643 - 18398606
Alignment:
Q  235 agttaacttacaccgacacttttaagatcggttgattc 272  Q
    ||||||||||||| ||||||||||||||||||| ||||    
T  18398643 agttaacttacactgacacttttaagatcggttcattc 18398606  T

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