View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19566_low_3 (Length: 492)
Name: NF19566_low_3
Description: NF19566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19566_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 17 - 476
Target Start/End: Original strand, 9643445 - 9643904
Alignment:
| Q |
17 |
atgaagtcagtaagatggatgagagactaagacttaaagaggatcatcttaaaaacaaggtactattgtatccaaaacaatgataaattctatgatgcat |
116 |
Q |
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| T |
9643445 |
atgaagtcagtaagatggatgagagactaagacttaaagaggatcatcttaaaaacaaggtactattgtatccaaaacaatgataaattctatgatgcat |
9643544 |
T |
|
| Q |
117 |
gttattcaaaatatcttcatatgcagaacctagaaatcaagaaactgacggacgaaaagaaagatgcgttggctgcacaatatgctgcagaatcagcact |
216 |
Q |
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| T |
9643545 |
gttattcaaaatatcttcatatgcagaacctagaaatcaagaaactgacggacgaaaagaaagatgcgttggctgcacaatatgctgcagaatcagcact |
9643644 |
T |
|
| Q |
217 |
tagaagattacacacagatcaaaaggaagaagatttttatccatttgaaagtgtcatcacgcctcttgaagacgagattaagatgtatagaactgaggta |
316 |
Q |
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| T |
9643645 |
tagaagattacacacagatcaaaaggaagaagatttttatccatttgaaagtgtcatcacgcctcttgaagacgagattaagatgtatagaactgaggta |
9643744 |
T |
|
| Q |
317 |
atgatactccaatttccattaatgatgcttttacaatgaaatattaaaatataaatatgtttagtccttaaaagatgataacactaacatcaattctgtc |
416 |
Q |
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| T |
9643745 |
atgatactccaatttccattaatgatgcttttacaatgaaatattaaaatataaatatgtttagtccttaaaagatgataacactaacatcaattctgtc |
9643844 |
T |
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| Q |
417 |
tacagattacagcactgcaggaagataagaaagctttggaacggctgacaaagtcgaaag |
476 |
Q |
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| T |
9643845 |
tacagattacagcactgcaggaagataagaaagctttggaacggctgacaaagtcgaaag |
9643904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 136 - 222
Target Start/End: Original strand, 56006393 - 56006479
Alignment:
| Q |
136 |
tatgcagaacctagaaatcaagaaactgacggacgaaaagaaagatgcgttggctgcacaatatgctgcagaatcagcacttagaag |
222 |
Q |
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| T |
56006393 |
tatgcagaatataggaatcaagaaactgacagacaaaaagaaaagtgcaatggctgcacaatatgccgcagaagcaacacttagaag |
56006479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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