View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19566_low_4 (Length: 426)
Name: NF19566_low_4
Description: NF19566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19566_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 9 - 412
Target Start/End: Complemental strand, 10270349 - 10269940
Alignment:
| Q |
9 |
agcataggcaccataata--gaagtggaacaagcccttgaagagaccaatataacgtaggttactctctttgacgcaagatgagtagtactagcttatat |
106 |
Q |
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| T |
10270349 |
agcattggcaccataatatagaagtggaacaagcccttgaagagaccaatataacgtaggttactctctttgaggcaagatgagtagtactagcttatat |
10270250 |
T |
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| Q |
107 |
ggattttggaggaagagaaagatgcaagagcaatatttcccagacaaataatggagtggccatatcctggtggatcaaaacaaatcatcacaaagtttta |
206 |
Q |
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| T |
10270249 |
ggattttggaggaagagaaagatgcaagagcaatatttcccagacaaataatggagtgaccatatcctggtgaatcaaaacaaatcatcacaaagtttta |
10270150 |
T |
|
| Q |
207 |
taatcttgacgaagtga----tgattccaaatggaaatggtaaagatataatcttccaagtggttcaatttgagtgaactttttgagaagatcatatgta |
302 |
Q |
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| T |
10270149 |
taatcttgacgaagtgataattaattccaaatggaaatggtaaagatataatcttccaagtggttcaatttgagtgaactttttgagaagatcatatgta |
10270050 |
T |
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| Q |
303 |
gaagaggaagataaagggaaacaaagcacaggaaaatataaattggactaattagcttttatagtcgatttgtttgtggaggaaatagagtactcacatg |
402 |
Q |
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| T |
10270049 |
gaagaggaagataaagggaaacaaagcacaggaaaatataaattggactaattagcttttatagtcgatttgtttgtggaggaaatagagtactcacatg |
10269950 |
T |
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| Q |
403 |
aacaaaataa |
412 |
Q |
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| T |
10269949 |
aacaaaataa |
10269940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 148 - 412
Target Start/End: Complemental strand, 10238563 - 10238306
Alignment:
| Q |
148 |
agacaaataatggagtggccatatcctggtggatcaaaacaaatcatcacaaagttttataatcttgacgaagtgatgattccaaatggaaatggtaaag |
247 |
Q |
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|||||||| | |||||||||| ||| |||||||||||||||||||||||||||||| | ||||||||| |||||||||||| ||||||||||||| |||| |
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| T |
10238563 |
agacaaatgagggagtggccacatcttggtggatcaaaacaaatcatcacaaagttctctaatcttgatgaagtgatgatttcaaatggaaatggcaaag |
10238464 |
T |
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| Q |
248 |
atataatcttccaagtggttcaatttgagtgaactttttgagaagatcatatgtagaagaggaagataaagggaaacaaagcacaggaaaatataaattg |
347 |
Q |
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| T |
10238463 |
gt----tcttccaagtggatcaatttaagtgaattttttgagaagatc--aagtggaaagggaaggtaaatggaaa-gaagcacaagaaaatagaaattg |
10238371 |
T |
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| Q |
348 |
gactaattagcttttatagtcgatttgtttgtggaggaaatagagtactcacatgaacaaaataa |
412 |
Q |
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| T |
10238370 |
ggctttttagcttttatagtcgatttgtttgtggaggaaatagagtactcacatgatcataataa |
10238306 |
T |
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