View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19566_low_9 (Length: 233)

Name: NF19566_low_9
Description: NF19566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19566_low_9
NF19566_low_9
[»] chr6 (15 HSPs)
chr6 (19-221)||(21968038-21968240)
chr6 (58-221)||(22001862-22002025)
chr6 (19-221)||(22085921-22086124)
chr6 (155-221)||(22207071-22207137)
chr6 (156-221)||(18995526-18995591)
chr6 (156-208)||(18979475-18979527)
chr6 (156-221)||(20083758-20083823)
chr6 (156-221)||(20235862-20235927)
chr6 (156-221)||(22129846-22129911)
chr6 (159-221)||(20233467-20233529)
chr6 (159-221)||(22127451-22127513)
chr6 (161-205)||(18990830-18990874)
chr6 (19-94)||(20235992-20236067)
chr6 (19-94)||(22129976-22130051)
chr6 (177-221)||(24387200-24387244)
[»] scaffold0074 (1 HSPs)
scaffold0074 (156-221)||(49868-49933)
[»] scaffold0007 (1 HSPs)
scaffold0007 (156-221)||(7402-7467)
[»] chr1 (5 HSPs)
chr1 (153-221)||(47619488-47619556)
chr1 (155-221)||(47743706-47743772)
chr1 (155-221)||(47758107-47758173)
chr1 (155-221)||(47627662-47627728)
chr1 (156-221)||(47584565-47584630)
[»] chr8 (3 HSPs)
chr8 (159-221)||(10401463-10401525)
chr8 (155-221)||(11225256-11225322)
chr8 (155-220)||(4159651-4159716)
[»] chr5 (3 HSPs)
chr5 (18-77)||(9102855-9102914)
chr5 (156-214)||(469788-469846)
chr5 (155-214)||(453831-453890)
[»] chr7 (2 HSPs)
chr7 (155-214)||(19939303-19939362)
chr7 (155-214)||(19970442-19970501)


Alignment Details
Target: chr6 (Bit Score: 166; Significance: 5e-89; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 21968240 - 21968038
Alignment:
Q  19 tcaagaggaaggaagtacaaattgagttgttggaacatagtaagtttcaaatgttcactactctattatctttttcaggttcttattgattacggtaaat 118  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21968240 tcaagaggaaggaagtacaaatagaattgttggaacatagtaagtttcaaatgttcactactctattatctttttcaggttcttattgattacggtaaat 21968141  T
Q  119 tcaagttaaattaacatcaaatttcannnnnnngtacagtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttat 218  Q
    ||||||||||||||| ||||||||||       ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  21968140 tcaagttaaattaacgtcaaatttcatttttttgtacagtggttatatgtctccagaatatgcaatgttttgacaattttctgaaaaatcagatgtttat 21968041  T
Q  219 agt 221  Q
    |||    
T  21968040 agt 21968038  T

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Target: chr6; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 58 - 221
Target Start/End: Complemental strand, 22002025 - 22001862
Alignment:
Q  58 gtaagtttcaaatgttcactactctattatctttttcaggttcttattgattacggtaaattcaagttaaattaacatcaaatttcannnnnnngtacag 157  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |       ||| ||    
T  22002025 gtaagtttcaaatgtttactactctattatctttttcaggttcttattgattacggtaaattcaagttaaattaacgtcaaatttaatttgtttgtaaag 22001926  T
Q  158 tggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagt 221  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  22001925 tggttatatgtctccagaatatgcaatgtttagacaattttctgaaaaatcagatatttatagt 22001862  T

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Target: chr6; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 22086124 - 22085921
Alignment:
Q  19 tcaagaggaaggaagtacaaattgagttgttggaacatagtaagtttcaaatgttcactactctattatctttttca-ggttcttattgattacggtaaa 117  Q
    |||||| ||||||||||||||| || ||||||||||||||||||||| ||||||| |||||| | ||||||| | |  |||||||||||||| | ||| |    
T  22086124 tcaagacgaaggaagtacaaatagaattgttggaacatagtaagttttaaatgtttactactttgttatcttatccccggttcttattgattgccgtaca 22086025  T
Q  118 ttcaagttaaattaacatcaaatttcannnnnnngtacagtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgttta 217  Q
    || |||||||||||||||||| |||          ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  22086024 tttaagttaaattaacatcaatttttttttttttttacagtggttatatgtcgccagaatatgcaatgtttggacaattttctgaaaaatcagatgttta 22085925  T
Q  218 tagt 221  Q
    ||||    
T  22085924 tagt 22085921  T

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Target: chr6; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 22207071 - 22207137
Alignment:
Q  155 cagtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagt 221  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||  ||||||||    
T  22207071 cagtggttatatgtctccagaatatgcaatgcttggacaattttctgaaaaatccgacatttatagt 22207137  T

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Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 156 - 221
Target Start/End: Complemental strand, 18995591 - 18995526
Alignment:
Q  156 agtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagt 221  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||  ||||||||    
T  18995591 agtggttatatgtctccggaatatgcaatgcttggacaattttctgaaaaatccgacatttatagt 18995526  T

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Target: chr6; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 18979527 - 18979475
Alignment:
Q  156 agtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatc 208  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  18979527 agtggttatatgtctccggaatatgtaatgtttggacaattttctgaaaaatc 18979475  T

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Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 156 - 221
Target Start/End: Complemental strand, 20083823 - 20083758
Alignment:
Q  156 agtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagt 221  Q
    ||||||||||||||||| ||||||| |||||| |||||||||||||||||||| ||  ||||||||    
T  20083823 agtggttatatgtctccggaatatgtaatgttcggacaattttctgaaaaatccgacatttatagt 20083758  T

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Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 156 - 221
Target Start/End: Complemental strand, 20235927 - 20235862
Alignment:
Q  156 agtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagt 221  Q
    ||||||||||||||||| |||||||||||| | |||||||||||||||||||| ||  ||||||||    
T  20235927 agtggttatatgtctccggaatatgcaatggtcggacaattttctgaaaaatccgacatttatagt 20235862  T

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Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 156 - 221
Target Start/End: Complemental strand, 22129911 - 22129846
Alignment:
Q  156 agtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagt 221  Q
    ||||||||||||||||| |||||||||||| | |||||||||||||||||||| ||  ||||||||    
T  22129911 agtggttatatgtctccggaatatgcaatggtcggacaattttctgaaaaatccgacatttatagt 22129846  T

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Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 221
Target Start/End: Original strand, 20233467 - 20233529
Alignment:
Q  159 ggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagt 221  Q
    ||||||||||||||||||||||| ||| | || ||||||||||| ||||| ||||||||||||    
T  20233467 ggttatatgtctccagaatatgcgatgctcgggcaattttctgagaaatctgatgtttatagt 20233529  T

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Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 221
Target Start/End: Original strand, 22127451 - 22127513
Alignment:
Q  159 ggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagt 221  Q
    ||||||||||||||||||||||| ||| | || ||||||||||| ||||| ||||||||||||    
T  22127451 ggttatatgtctccagaatatgcgatgctcgggcaattttctgagaaatctgatgtttatagt 22127513  T

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Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 18990874 - 18990830
Alignment:
Q  161 ttatatgtctccagaatatgcaatgtttggacaattttctgaaaa 205  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||    
T  18990874 ttatatgtctccggaatatgtaatgtttggacaattttctgaaaa 18990830  T

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Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 20236067 - 20235992
Alignment:
Q  19 tcaagaggaaggaagtacaaattgagttgttggaacatagtaagtttcaaatgttcactactctattatctttttc 94  Q
    |||||| || |||||||||||| || |||||||||||| ||||||||  |||||| ||  |||| |||||||||||    
T  20236067 tcaagatgagggaagtacaaatagaattgttggaacattgtaagttttgaatgttgacccctctgttatctttttc 20235992  T

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Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 22130051 - 22129976
Alignment:
Q  19 tcaagaggaaggaagtacaaattgagttgttggaacatagtaagtttcaaatgttcactactctattatctttttc 94  Q
    |||||| || |||||||||||| || |||||||||||| ||||||||  |||||| ||  |||| |||||||||||    
T  22130051 tcaagatgagggaagtacaaatagaattgttggaacattgtaagttttgaatgttgacccctctgttatctttttc 22129976  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 24387200 - 24387244
Alignment:
Q  177 tatgcaatgtttggacaattttctgaaaaatcagatgtttatagt 221  Q
    |||| ||||||||||||||||||||||||||| ||  ||||||||    
T  24387200 tatgtaatgtttggacaattttctgaaaaatccgacatttatagt 24387244  T

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Target: scaffold0074 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 156 - 221
Target Start/End: Original strand, 49868 - 49933
Alignment:
Q  156 agtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagt 221  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||  ||||||||    
T  49868 agtggttatatgtctccggaatatgcaatgcttggacaattttctgaaaaatccgacatttatagt 49933  T

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Target: scaffold0007 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 156 - 221
Target Start/End: Original strand, 7402 - 7467
Alignment:
Q  156 agtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagt 221  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||  ||||||||    
T  7402 agtggttatatgtctccggaatatgcaatgcttggacaattttctgaaaaatctgacatttatagt 7467  T

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Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 153 - 221
Target Start/End: Original strand, 47619488 - 47619556
Alignment:
Q  153 tacagtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagt 221  Q
    |||||||||||||||||||| |||||||||||| ||||| |||| |||||||||||||| |||| ||||    
T  47619488 tacagtggttatatgtctcctgaatatgcaatgcttggaaaattctctgaaaaatcagacgtttttagt 47619556  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 47743772 - 47743706
Alignment:
Q  155 cagtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagt 221  Q
    |||||| |||||| |||| || ||||||||||||||| ||||||| | |||||||||||||| ||||    
T  47743772 cagtggatatatggctcctgagtatgcaatgtttggagaattttcggtaaaatcagatgtttttagt 47743706  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 47758173 - 47758107
Alignment:
Q  155 cagtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagt 221  Q
    |||||| |||||| |||| || ||||||||||||||| ||||||| | |||||||||||||| ||||    
T  47758173 cagtggatatatggctcctgagtatgcaatgtttggagaattttcggtaaaatcagatgtttttagt 47758107  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 47627662 - 47627728
Alignment:
Q  155 cagtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagt 221  Q
    ||||||||| |||||||| ||||||||||||  |||||||||||| || || || ||||||| ||||    
T  47627662 cagtggttacatgtctccggaatatgcaatgcatggacaattttcagagaagtctgatgtttttagt 47627728  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 221
Target Start/End: Original strand, 47584565 - 47584630
Alignment:
Q  156 agtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagt 221  Q
    ||||||||||| |||||||||||||| |||  |||| | |||||||  ||||||||||| ||||||    
T  47584565 agtggttatatatctccagaatatgccatgcatggatacttttctgtgaaatcagatgtgtatagt 47584630  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 159 - 221
Target Start/End: Complemental strand, 10401525 - 10401463
Alignment:
Q  159 ggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagt 221  Q
    |||||||| |||||||||||||||||| ||||||||||||| || ||||| ||||||||||||    
T  10401525 ggttatatatctccagaatatgcaatgcttggacaattttcggagaaatctgatgtttatagt 10401463  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 11225256 - 11225322
Alignment:
Q  155 cagtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagt 221  Q
    |||||| |||||| |||| || ||||||||||||||| ||||||| | |||||||||||||| ||||    
T  11225256 cagtggatatatggctcctgagtatgcaatgtttggagaattttcggtaaaatcagatgtttttagt 11225322  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 220
Target Start/End: Complemental strand, 4159716 - 4159651
Alignment:
Q  155 cagtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatag 220  Q
    ||||||||||||| | || ||||||||||||   ||||  |||||||| |||||||||||||||||    
T  4159716 cagtggttatatgccgcctgaatatgcaatggaaggacttttttctgagaaatcagatgtttatag 4159651  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 9102855 - 9102914
Alignment:
Q  18 atcaagaggaaggaagtacaaattgagttgttggaacatagtaagtttcaaatgttcact 77  Q
    ||||||| ||||||||||||||| || |||||||| ||||||||||||  ||||||||||    
T  9102855 atcaagacgaaggaagtacaaatagaattgttggagcatagtaagttttgaatgttcact 9102914  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 214
Target Start/End: Complemental strand, 469846 - 469788
Alignment:
Q  156 agtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgt 214  Q
    ||||||||||||||||| ||||||||||||   |||||||||||||| ||||| |||||    
T  469846 agtggttatatgtctccggaatatgcaatgcacggacaattttctgagaaatccgatgt 469788  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 453890 - 453831
Alignment:
Q  155 cagtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgt 214  Q
    |||||||||||||||| | ||||||||||||  |||||| | ||| ||||||||||||||    
T  453890 cagtggttatatgtcttccgaatatgcaatgcatggacattattcagaaaaatcagatgt 453831  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 214
Target Start/End: Original strand, 19939303 - 19939362
Alignment:
Q  155 cagtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgt 214  Q
    |||||||||||||||||||||||||||||||   ||||  |||||||| ||||| |||||    
T  19939303 cagtggttatatgtctccagaatatgcaatgcaaggactgttttctgataaatctgatgt 19939362  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 214
Target Start/End: Original strand, 19970442 - 19970501
Alignment:
Q  155 cagtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgt 214  Q
    |||||||||||||||||||||||||||||||   ||||  |||||||| ||||| |||||    
T  19970442 cagtggttatatgtctccagaatatgcaatgcaaggactgttttctgataaatctgatgt 19970501  T

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