View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19567_high_1 (Length: 1244)
Name: NF19567_high_1
Description: NF19567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19567_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 1137; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 1137; E-Value: 0
Query Start/End: Original strand, 19 - 1230
Target Start/End: Original strand, 7901266 - 7902475
Alignment:
| Q |
19 |
atggcaagcttgggaagtttcatgtctgtattaaactttctcttatttctctttgttggtttaatctcttcatctgaagctgccataaagaaataccagt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7901266 |
atggcaagcttgggaagtttcatgtctgtattaaactttctcttatttctctttgttggtttaatctcttcatctgaagctgccataaagaaataccagt |
7901365 |
T |
|
| Q |
119 |
ttgatgtgagttattatatttcgatcatattcataccttaaccactatagctagcaatgcatggttcccttaatagcatttcgttctttctacagattca |
218 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7901366 |
ttgatgtgagttattatattttgatcatattcataccttaactactatagctagcaatgcatggttcccttaatagcatttcgttctttctacagattca |
7901465 |
T |
|
| Q |
219 |
agtgaagaatgtgagtagactgtgccatgcaaaacccattgtaactgtaaatgggaggtttccagggccaactatctatgctagggaaggagatcaagtg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7901466 |
agtgaagaatgtgagtagactgtgccatgcaaaacccattgtaactgtaaatgggaggtttccagggccaactatctatgctagggaaggagatcaagtg |
7901565 |
T |
|
| Q |
319 |
tttgtcaacgttaccaaccatgcacaatacaacatgtcgattcattggtagctgaatttcacgaatcaattaaatacatataggtgaagtttttaacact |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7901566 |
tttgtcaacgttaccaaccatgcacaatacaacatgtcgattcattggtagctgaatttcacaaatcaattaaatac--ataggtgaagtttttaacact |
7901663 |
T |
|
| Q |
419 |
agaaaatacatgtttttctctaacaatcgtatatatgcttgttataggcatggacttaaacaatatcgtaatggttgggcggatggaccggcttacatca |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7901664 |
agaaaatacatgtttttctctaacaatcgtatatatgcttgttataggcatggacttaaacaatatcgtaatggttgggcggatggaccggcttacatca |
7901763 |
T |
|
| Q |
519 |
cacagtgtccgatacagaccggaaacagctatacttacgaattcaacgttactgggcaaagaggaacactatggtggcatgcacacattttctggcttag |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7901764 |
cacagtgtccgatacagaccggaaacagctatacttacgaattcaacgttactgggcaaagaggaacactatggtggcatgcacacattttctggcttag |
7901863 |
T |
|
| Q |
619 |
ggccactgtctacggggcaatagtaattatgcctaaacttggaacaccgtttcctttcccacagccagctagagaattcgaaattgtcttaggtaagtat |
718 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7901864 |
ggccactgtctacggggcaatagtaattatgcctaaacttggaacaccatttcctttcccacagccagctagagaattcgaaattgtcttaggtaagtat |
7901963 |
T |
|
| Q |
719 |
tataaagattcatttttccnnnnnnnngtattataaagattcatcggatgaaataagaagtatgaaagttgatgtactaattgtttctgcatccaatagg |
818 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7901964 |
tataaagattcatttttccaaaaaaaagtattataaagattcatgggatgaaataagaagtatgaaagttgatgtactaattgtttctgcatgcaatagg |
7902063 |
T |
|
| Q |
819 |
tgaatggtggaacaatgatgtggaagagattgaaaagcaaggaaacaaattggggttgccaccaaatgtgtcagatgcacatacgatcaatggaaaacca |
918 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
7902064 |
tgaatggtggaacaatgatgtggaagagattgaaaagcaagggaacaaattggggttgccaccaaatatgtcagatgcacatacgatcaatggaaaacca |
7902163 |
T |
|
| Q |
919 |
ggaccactatttccttgttctgagaagcgtaagaaaaattagtcgagcacagttttaaatagactatgctataccgtagatctaattaacaggctgaata |
1018 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7902164 |
ggaccactatttccttgttctgagaagcgtaagaaaaattagtcgagcacagttttaaatagactatgctataccgtagatctaattaacaggctgaata |
7902263 |
T |
|
| Q |
1019 |
caatttgtacaaatacaaaatatttaattatatttacaagagaataaaatctttatttgaagttcaattaatttgcttcaattttctagacacatttgca |
1118 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7902264 |
caatttgtacaaatacaaaatatttaattatagttacaagagaataaattctttatttgaagttcaattaatttgcttcaattttctagacacatttgca |
7902363 |
T |
|
| Q |
1119 |
atggaggtagaacaagggaagacatacctcatgagaatcgtcaacgctgccctcaacgatgagcttttctttgccattgcgggtcacaacatgacagtag |
1218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7902364 |
atggaggtagaacaagggaagacatacctcatgagaatcgtcaacgctgccctcaacgatgagcttttctttgccattgcgggtcacaacatgacagtag |
7902463 |
T |
|
| Q |
1219 |
tggaggttgatg |
1230 |
Q |
| |
|
|||||||||||| |
|
|
| T |
7902464 |
tggaggttgatg |
7902475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 820 - 953
Target Start/End: Original strand, 7891747 - 7891880
Alignment:
| Q |
820 |
gaatggtggaacaatgatgtggaagagattgaaaagcaaggaaacaaattggggttgccaccaaatgtgtcagatgcacatacgatcaatggaaaaccag |
919 |
Q |
| |
|
||||||||| |||| |||||||||||||| | ||| ||||| ||| || ||||||||||||||||| |||| |||||||||||||||||||| || |||| |
|
|
| T |
7891747 |
gaatggtggcacaaagatgtggaagagatagtaaaccaagggaaccaaatggggttgccaccaaatatgtcggatgcacatacgatcaatgggaagccag |
7891846 |
T |
|
| Q |
920 |
gaccactatttccttgttctgagaagcgtaagaa |
953 |
Q |
| |
|
||||||| ||||||||||| ||||| |||||||| |
|
|
| T |
7891847 |
gaccactctttccttgttccgagaaacgtaagaa |
7891880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 4e-26
Query Start/End: Original strand, 211 - 312
Target Start/End: Original strand, 7891022 - 7891123
Alignment:
| Q |
211 |
cagattcaagtgaagaatgtgagtagactgtgccatgcaaaacccattgtaactgtaaatgggaggtttccagggccaactatctatgctagggaaggag |
310 |
Q |
| |
|
||||||||| |||||||||||||||| || |||||||||||||| |||||||| ||||||||||||| |||||||||||| || ||||||| ||||||| |
|
|
| T |
7891022 |
cagattcaaatgaagaatgtgagtaggctatgccatgcaaaaccaattgtaacagtaaatgggaggtatccagggccaacaatttatgctacagaaggag |
7891121 |
T |
|
| Q |
311 |
at |
312 |
Q |
| |
|
|| |
|
|
| T |
7891122 |
at |
7891123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 464 - 705
Target Start/End: Original strand, 7891303 - 7891544
Alignment:
| Q |
464 |
aggcatggacttaaacaatatcgtaatggttgggcggatggaccggcttacatcacacagtgtccgatacagaccggaaacagctatacttacgaattca |
563 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||| |||||||| ||||| || || || ||||| || || || || ||||| || || || |||| |
|
|
| T |
7891303 |
aggcatggacttaaacagtatcgcaatggttgggctgatggaccagcttatattactcaatgtccaattcaaactggtggaagctacacatatgacttca |
7891402 |
T |
|
| Q |
564 |
acgttactgggcaaagaggaacactatggtggcatgcacacattttctggcttagggccactgtctacggggcaatagtaattatgcctaaacttggaac |
663 |
Q |
| |
|
| || || || ||||||||||| | ||||||||||| || ||| | ||| | ||||| ||||| || || ||||| || || |||||||||| ||||| |
|
|
| T |
7891403 |
atgtgacaggacaaagaggaactttgtggtggcatgctcatattctttggttaagggctactgtttatggtgcaattgttatcatgcctaaaccaggaac |
7891502 |
T |
|
| Q |
664 |
accgtttcctttcccacagccagctagagaattcgaaattgt |
705 |
Q |
| |
|
|| |||||||| ||||| |||||||||||||| |||||||| |
|
|
| T |
7891503 |
cccttttccttttccacaaccagctagagaatttgaaattgt |
7891544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 1100 - 1230
Target Start/End: Original strand, 7892072 - 7892202
Alignment:
| Q |
1100 |
ttttctagacacatttgcaatggaggtagaacaagggaagacatacctcatgagaatcgtcaacgctgccctcaacgatgagcttttctttgccattgcg |
1199 |
Q |
| |
|
||||||||| |||| |||||||||||| || | || |||||||| || | |||||| |||| || ||||| || ||||||||||||||| || |||| |
|
|
| T |
7892072 |
ttttctagatacatatgcaatggaggttgagaagggcaagacatatctgctaagaatcatcaatgcagcccttaatgatgagcttttcttttcccttgct |
7892171 |
T |
|
| Q |
1200 |
ggtcacaacatgacagtagtggaggttgatg |
1230 |
Q |
| |
|
|||||||||||||||||||| || ||||||| |
|
|
| T |
7892172 |
ggtcacaacatgacagtagttgaagttgatg |
7892202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 450 - 941
Target Start/End: Original strand, 31213672 - 31214165
Alignment:
| Q |
450 |
tatatgcttgttataggcatggacttaaacaatatcgtaatggttgggcggatggaccggcttacatcacacagtgtccgatacagaccggaaacagcta |
549 |
Q |
| |
|
||||||||| | |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31213672 |
tatatgcttatcataggcatggacttaaacaataatgtaatggtttggcggatggaccggcttacatcacacagtgtccgatacagaccggaaacagcta |
31213771 |
T |
|
| Q |
550 |
tacttacgaattcaacgttactgggcaaagagg---aacactatggtggcatgcacacattttctggcttagggccactgtctacggggcaatagtaatt |
646 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
31213772 |
tacttacaaattcaacgttactgggaaaagaggaacaacactatggtggcatgcacacattttctggctgagggccactgtctatggggcaatagtaatc |
31213871 |
T |
|
| Q |
647 |
atgcctaaacttggaacaccgtttcctttcccacagccagctagagaattcgaaattgtcttaggtaagtattataaagattcatttttcc----nnnnn |
742 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31213872 |
atgcctaaacttggaatacc-tttcctttcccacagccagctagagaagtcaaaattgtcttaggtaagtattataaagattcatttttccaaaaaaaaa |
31213970 |
T |
|
| Q |
743 |
nnngtattataaagattcatcggatgaaataagaagtatgaaagttgatgtactaattgtttctgcatccaataggtgaatggtggaacaatgatgtgga |
842 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
31213971 |
aaagtattataaagattcatcgg----aataagaagtatgaaagttgatatactaattgtttctgcatgcaataggtgaatggtggaacaatgatgtgga |
31214066 |
T |
|
| Q |
843 |
agagattgaaaagcaaggaaacaaattggggttgccaccaaatgtgtcagatgcacatacgatcaatggaaaaccaggaccactatttccttgttctga |
941 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
31214067 |
agagattgaaaatcaaggaaacaatatggggttgtcaccaaatatgtcagatgcacatacgatcaatggaaaaccaggaccgctatttccttgttctga |
31214165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 350
Target Start/End: Original strand, 31213301 - 31213637
Alignment:
| Q |
19 |
atggcaagcttgggaagtttcatgtctgtattaaactttctcttatttctctttgttggtttaatctcttcatctgaagctgccataaagaaataccagt |
118 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
31213301 |
atggcaagcttgggaagtttcacgtctgtattaaactttctgttatttctctttgttggtttattctcttcatctgaagctgccataaggaaataccagt |
31213400 |
T |
|
| Q |
119 |
ttgatgtgagttattatatttcgatcatattca---taccttaacc-actatagctagcaatgcatggttcccttaatagcatttc-gttctttctacag |
213 |
Q |
| |
|
|||||||||||||| |||||| ||| ||||||| | ||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
31213401 |
ttgatgtgagttataatattttgataatattcagcatgccttaactgactatagctagcaatgcaaggttcccttaatagcatttttgttctttctacag |
31213500 |
T |
|
| Q |
214 |
attcaagtgaagaatgtgagtagactgtgccatgcaaaacccattgtaactgtaaatgggaggtttccagggccaactatctatgctagggaaggagatc |
313 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||| ||||||| |
|
|
| T |
31213501 |
attcaagataagaatgtgagtagattgtgccatgcaaaacccattgtaacggtaaatgggaggtttccagggccaactatcaatgccagggagggagatc |
31213600 |
T |
|
| Q |
314 |
aagtgtttgtcaacgttaccaaccatgcacaatacaa |
350 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
31213601 |
aagtgcttgtcaacgttaccaaccatgcacaatacaa |
31213637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 391 - 432
Target Start/End: Original strand, 31213631 - 31213672
Alignment:
| Q |
391 |
aatacatataggtgaagtttttaacactagaaaatacatgtt |
432 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
31213631 |
aatacaaataggtgaagtttttaacactagaaaatacatgtt |
31213672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 460 - 496
Target Start/End: Complemental strand, 55603227 - 55603191
Alignment:
| Q |
460 |
ttataggcatggacttaaacaatatcgtaatggttgg |
496 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
55603227 |
ttataggcatggacttaaacaatatcgcaatggttgg |
55603191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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