View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19567_high_5 (Length: 530)
Name: NF19567_high_5
Description: NF19567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19567_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 12 - 515
Target Start/End: Complemental strand, 42537463 - 42536960
Alignment:
| Q |
12 |
aagaatatggttggtgtgtaatgcttgatttatgtgcattgagaccaaaagaaagagacactttaggtatgtctatgtttaaacctgattttatggtttg |
111 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42537463 |
aagaaaatggttggtgtgtaatgcttgatttatgtgcattgagaccaaaagaaagagacactttaggtatgtctatgtttaaacctgattttatggtttg |
42537364 |
T |
|
| Q |
112 |
ttcattttacaaaatatttggtgaaaatccatctgggtttggttgtttatttgtcaaaaaatcaagtatttcttctcttaaagatttaggaaatgctaca |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42537363 |
ttcattttacaaaatatttggtgaaaatccatctgggtttggttgtttatttgtcaaaaaatcaagtatttcttctcttaaagatttaggaaatgctaca |
42537264 |
T |
|
| Q |
212 |
agcataggaattataagtcttgttcctacatttgcacaatgtcacacttctagctctcgtcgaaatgatagtgcaccaccaaactctggattattaggac |
311 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| || |||||||| |||||| ||| |||||||||| |
|
|
| T |
42537263 |
agcattggaattataagtcttgttcctacatttgcacaatgtcacacttctagctctcatcaaaacgagagtgcaccgccaaacgctgaattattaggat |
42537164 |
T |
|
| Q |
312 |
tcgcttctcctgagaaccagagggttaagactaaagaagagcaaaatgaggtatcatcatcatcagaaattgtggagctacaaggcatggacatgaatga |
411 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
42537163 |
tcgcttctcctgagaaccagagggataagactaaagaagagcaaaatgaggtatcatcattatcagaaattgtggagttacaaggcatggacatgaatga |
42537064 |
T |
|
| Q |
412 |
tgaaagattggaaattgagtgtagaggattagaccacgcagactcagtgggactaatagtgattagtacaagaacaaggtatttgattaattggcttgtt |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42537063 |
tgaaagattggaaattgagtgtagaggattagaccacgcagactcagtgggactaatagtgattagtacaagaacaaggtatttgattaattggcttgtt |
42536964 |
T |
|
| Q |
512 |
aatg |
515 |
Q |
| |
|
|||| |
|
|
| T |
42536963 |
aatg |
42536960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 368 - 468
Target Start/End: Complemental strand, 42530992 - 42530893
Alignment:
| Q |
368 |
tcatcatcagaaattgtggagctacaaggcatggacatgaatgatgaaagattggaaattgagtgtagaggattagaccacgcagactcagtgggactaa |
467 |
Q |
| |
|
||||| || ||||| |||||||||||||||||| ||||||| ||||||||| |||||||| ||||||||||||||||| ||| ||| ||||||||||| |
|
|
| T |
42530992 |
tcatcgtcggaaatcgtggagctacaaggcatgaacatgaagaatgaaagat-ggaaattgtatgtagaggattagaccatgcaaacttagtgggactaa |
42530894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 108 - 174
Target Start/End: Original strand, 45958115 - 45958181
Alignment:
| Q |
108 |
tttgttcattttacaaaatatttggtgaaaatccatctgggtttggttgtttatttgtcaaaaaatc |
174 |
Q |
| |
|
|||||||||| |||||| | ||||| |||||||||||||| |||||||| | |||||||| ||||| |
|
|
| T |
45958115 |
tttgttcattctacaaagtttttggagaaaatccatctggttttggttgcctttttgtcaagaaatc |
45958181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University