View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19567_low_12 (Length: 306)
Name: NF19567_low_12
Description: NF19567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19567_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 7558374 - 7558663
Alignment:
| Q |
1 |
tttcaaaataatcaaaatattaaatctataattttgtgaccatagaagtctactatcttaatcttatcgtattttattgagtatgaaataatgtagtatg |
100 |
Q |
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| T |
7558374 |
tttcaaaataatcaaaatattaaatctataattttgtgaccatagaagtctactatcttaatcttatcgtattttattgagtatgaaataatgtagtatg |
7558473 |
T |
|
| Q |
101 |
acatcctagaaactatgactctgtcaataattaatatgcattctagaaagtcatatggctcaatatactattgtcattaacgtgttacacatgaaaacga |
200 |
Q |
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| T |
7558474 |
acatcctagaaactatgaccctgtcaataattaatatgcattctagaaagtcatatgactcaatatactattgtcattaacgtgttacacatgaaaacga |
7558573 |
T |
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| Q |
201 |
ccatggcccataatttcttcgtttcattttcctttcaacaaactatataaatatgtctttaactcaagtcattcttatttcacttccaac |
290 |
Q |
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| T |
7558574 |
ccatggcccataatttcttcgtttcattttcctttgaacaaaccatataaatatgtctttaattcaagtcatttttatttcacttccaac |
7558663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 173 - 291
Target Start/End: Original strand, 7562675 - 7562795
Alignment:
| Q |
173 |
gtcattaacgtgttacacatgaaaacgaccatggcccataatttcttcgtttcattttcctttcaacaaac--tatataaatatgtctttaactcaagtc |
270 |
Q |
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|||||| |||||||||| |||| ||| ||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
7562675 |
gtcatttacgtgttacatatgacggcgagcatggtccataatttcttcgtttcattttccattcaacaaaccatatataaatatgtctttaactcaagtc |
7562774 |
T |
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| Q |
271 |
attcttatttcacttccaact |
291 |
Q |
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| T |
7562775 |
attcttatttcacttccaact |
7562795 |
T |
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