View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19567_low_15 (Length: 253)
Name: NF19567_low_15
Description: NF19567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19567_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 7 - 242
Target Start/End: Original strand, 24358479 - 24358713
Alignment:
| Q |
7 |
tagattattcttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgataaatcagttgagattttggatgaatggcttaatcggaa |
106 |
Q |
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| T |
24358479 |
tagattattcttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgatgaatcagttgagattttggacgaatggcttaattggaa |
24358578 |
T |
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| Q |
107 |
gaaggctaaacaaagatcaccttttgtttctcctcgaccacataagaaagttcgagg-ttggtttggtttcttgattttcttttcagtgtgcatatatat |
205 |
Q |
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| T |
24358579 |
gaaggctaaacaaagatcacctttcgtttctcctcgaccacataaaaaagttcgaggtttggtttggtttcttgattttcttttcagtgt--acatatat |
24358676 |
T |
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| Q |
206 |
aatacataatggattgatgctcttcaagagtttcttc |
242 |
Q |
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| T |
24358677 |
aatacataatggattgatgctcttcaagagtttcttc |
24358713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 16 - 191
Target Start/End: Original strand, 24369844 - 24370020
Alignment:
| Q |
16 |
cttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgataaatcagttgagattttggatgaatggcttaatcggaagaaggctaa |
115 |
Q |
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| T |
24369844 |
cttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgatgaatcagttgagattttggatgaatggcttaatcggaagaaggctag |
24369943 |
T |
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| Q |
116 |
acaaagatcaccttttgtttctcctcgaccacataagaaagttcgagg-ttggtttggtttcttgattttcttttca |
191 |
Q |
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| T |
24369944 |
acaaagatcaccttttgtttcttctcgaccacataagaaagttcaaggtttggtttggtttcttgattttcttttca |
24370020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 13 - 193
Target Start/End: Complemental strand, 24364806 - 24364625
Alignment:
| Q |
13 |
attcttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgataaatcagttgagattttggatgaatggcttaatcggaagaaggc |
112 |
Q |
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| T |
24364806 |
attcttcaagtgacactaatgatgaaaatgacaatgttgatcatagtgatgatgatgaatcagttgagattttggatgaatggcttaatcggaagaaggc |
24364707 |
T |
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| Q |
113 |
taaacaaagatcaccttttgtttctcctcgaccacataagaaagttcgagg-ttggtttggtttcttgattttcttttcagt |
193 |
Q |
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| T |
24364706 |
tagacaaagatcaccttttatttctactcgaccacataagaaagttcgaggtttggtttggtttcttgattttcttttcagt |
24364625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 49 - 164
Target Start/End: Original strand, 24354862 - 24354974
Alignment:
| Q |
49 |
ttgatcatagtgatgatgataaatcagttgagattttggatgaatggcttaatcggaagaaggctaaacaaagatcaccttttgtttctcctcgaccaca |
148 |
Q |
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| T |
24354862 |
ttgatcatagtgatgatgag---tctgttgagattttggaagaatggcttaatcagaagaatgctagacaaagatcacctttcgtttctcctcgacctca |
24354958 |
T |
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| Q |
149 |
taagaaagttcgaggt |
164 |
Q |
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| T |
24354959 |
taagaaagttagaggt |
24354974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 24344557 - 24344634
Alignment:
| Q |
16 |
cttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgataaatcagttgagattttggatgaatggc |
96 |
Q |
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| T |
24344557 |
cttcatgtgacactgatgatgaaaatgacaatgttggtcatagtgatgatg---aatcagttgagattttagatgaatggc |
24344634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 155
Target Start/End: Original strand, 24351741 - 24351880
Alignment:
| Q |
13 |
attcttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgataaatcagttgagattttggatgaatggcttaatcggaagaaggc |
112 |
Q |
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||||||||||||||| |||||||||||||| ||||||| ||| | |||| ||| ||||| ||||||||| |||||||||| |||| ||||| || |
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| T |
24351741 |
attcttcatgtgacactgatgatgaaaatggaaatgttggtcaaa---atgacgatgaatcacttgagatttcagatgaatggcgaaatcagaagattgc |
24351837 |
T |
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| Q |
113 |
taaacaaagatcaccttttgtttctcctcgaccacataagaaa |
155 |
Q |
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|| | |||| |||| || ||| ||||||||||||||||||| |
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| T |
24351838 |
tagaaaaaggccaccattattttatcctcgaccacataagaaa |
24351880 |
T |
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