View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19567_low_3 (Length: 600)
Name: NF19567_low_3
Description: NF19567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19567_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 535; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 11 - 585
Target Start/End: Original strand, 9666054 - 9666628
Alignment:
| Q |
11 |
cacagaatgagtccaccgatgatgataaccaccggaaccaatcacccgcgatgaggaaaaccataaagaaaacaataatcattgatgaatcttccttaga |
110 |
Q |
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| T |
9666054 |
cacagaatgagtccaccgatgatgataaccaccggaaccaatcacccgcgatgaggaaaaccataaagaaaacaataatcattgatgaatcttccttaga |
9666153 |
T |
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| Q |
111 |
gaatcctgatttgggtccatttcttctgaagatggcaagagataccatagcttctggtgagaatccagaaaaggctttggattatgcaattcgggcatcc |
210 |
Q |
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| T |
9666154 |
gaatcctgatttgggtccatttcttctgaagatggcaagagataccatagcttctggtgagaatccagaaaaggctttggattatgcaattcgggcatcc |
9666253 |
T |
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| Q |
211 |
aaatgttttgaacgggtttcgggtccgggtgtggatcttgctacatgtcttcatgttgttgctgcaatttattgtagtttggggaatttggatgaggcta |
310 |
Q |
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| T |
9666254 |
aagtgttttgaacgggttttgggtccgggtgtggatcttgccacgtgtttacatgttgttgctgcaatttattgtagtttggggaatttggatgcggcta |
9666353 |
T |
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| Q |
311 |
ttgaggagttggaacagtctattttgttgttggatgttgaaaacgggtcgggtcatgctatggtgaagttttctggatatatgcaacttggtgatactta |
410 |
Q |
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| T |
9666354 |
ttgaggagttggaaaggtctattatgttgttggatgttgaaaacgggtcgggtcatgctatggtgaagttttctggatatatgcaacttggtgatactta |
9666453 |
T |
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| Q |
411 |
ttctatgactggattgttggatagatccattctgtgttatgagtcgggtttgaagattcaaatggatattttgggtaagtccgacccgagagttgctgag |
510 |
Q |
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| T |
9666454 |
ttctatgactggattgttggatagatccattctgtgttatgagtcgggtttgaagattcaaatggatattttgggtaagtccgacccgagagttgctgag |
9666553 |
T |
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| Q |
511 |
acttgcaggtaaagttattaacatgtcttgttttgatgtcttcacatacacatatatgcaatgtaatgttacttt |
585 |
Q |
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| T |
9666554 |
acttgcaggtaaagttattaacatgtcttgttttgatgtcttcacatacacatatatgcaatgtaatgttacttt |
9666628 |
T |
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