View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19567_low_4 (Length: 560)
Name: NF19567_low_4
Description: NF19567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19567_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 509; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 1 - 546
Target Start/End: Original strand, 21821168 - 21821713
Alignment:
| Q |
1 |
agataagaagctaatctagaactggcgaccactacaacttctgatgaagaatctgactcatactttgatgatgatgatgaagtactttcaaaactaactc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21821168 |
agataagaagctaatctagaactggcgaccactacaacttctgatgaagaatctgactcatactttgatgatgatgatgaagtactttcaaaactaactc |
21821267 |
T |
|
| Q |
101 |
aagaacaatatattagtaccatcaaagaacgtgtaagatgttatttggacaaatcaaacgcgttaaaaactttacaaaaacaatttgatttgctgacaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
21821268 |
aagaacaatatattagtaccatcaaagaacgtgtaagatgttatttggacaaatcaaacgtgttaaaaactttacaaaaacaatttgatttgctgacaga |
21821367 |
T |
|
| Q |
201 |
agaatccaagttcttgaaacaccaaaacaagagtctgtcaaatcaaaattaaaatcttataacgagaaatgaaattttggagaaatatcaatttttaaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21821368 |
agaatccaagttcttgaaacaccaaaacaagagtctgtcaaatcaaaattaaaatcttataacgagaaatgaaattttggagaaatatcaatttttaaac |
21821467 |
T |
|
| Q |
301 |
atcnnnnnnnttgatagaacattgacaaaattcgataatgctcttgaagaatttatcattggtggtattaaaaaagtaagttagcttccatgaaatcact |
400 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21821468 |
atcaagaaaattgatagaacattgacaaaattcgataatgctcttgaagaatttatcattggtggtattaaaaaagtaagttagcttccatgaaatcact |
21821567 |
T |
|
| Q |
401 |
aacacacaaccaccaccatctcttgtacttccatccgctgaaattaattcacccactcttaatgcatccaacaatacctgtgccactcctactgttgtga |
500 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21821568 |
aacacacaaccaccaccatctcttgtacttccatccactgaaattaattcacccactcttaatgcatccaacaatacctgtgccactcctactgttgtga |
21821667 |
T |
|
| Q |
501 |
cagaacaaccagctgattctgaaaaggctgtcacaatagaacttct |
546 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
21821668 |
cagaacaaccagctgattctgaaaaggcagtcacaacagaacttct |
21821713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 149 - 393
Target Start/End: Original strand, 11450548 - 11450793
Alignment:
| Q |
149 |
acaaatcaaacgcgttaaaaactttacaaaaacaatttgatttgctgacagaagaatccaagttcttgaaacaccaaaacaagagtctgtcaaatcaaaa |
248 |
Q |
| |
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|||||||||| || |||||||| || |||||| | ||||||||| ||||| |||| |||||| ||||| |||||||||| || || ||||||| ||||| |
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| T |
11450548 |
acaaatcaaaagctttaaaaaccttgcaaaaatagtttgatttgttgacataagagtccaagctcttggaacaccaaaataaaagactgtcaatccaaaa |
11450647 |
T |
|
| Q |
249 |
ttaaaatcttataacgagaaatgaaattttggagaaatatcaatttttaaacatcnnnnnnnttgatagaacattgacaaaattcgataatgctcttgaa |
348 |
Q |
| |
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| ||||||| | || || |||||||||||| |||||| | ||| ||| ||||||| |||| ||| | ||||| ||||| ||||||| | ||||| |
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| T |
11450648 |
tgaaaatctaaaaatgataaatgaaattttagagaaaaaacaactttcaaacatcaagaaaattgacagacctttgactaaatttgataatgttattgaa |
11450747 |
T |
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| Q |
349 |
gaatttatcattggtggtatt-aaaaaagtaagttagcttccatga |
393 |
Q |
| |
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| T |
11450748 |
gagtttatcattggtgggattgacaaaagcaaattagcttacatga |
11450793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 149 - 393
Target Start/End: Complemental strand, 11544187 - 11543942
Alignment:
| Q |
149 |
acaaatcaaacgcgttaaaaactttacaaaaacaatttgatttgctgacagaagaatccaagttcttgaaacaccaaaacaagagtctgtcaaatcaaaa |
248 |
Q |
| |
|
|||||||||| || |||||||| || |||||| | ||||||||| ||||| |||| |||||| ||||| |||||||||| || |||||||||| ||||| |
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| T |
11544187 |
acaaatcaaaagctttaaaaaccttgcaaaaatagtttgatttgttgacacaagagtccaagctcttggaacaccaaaataaaagtctgtcaatccaaaa |
11544088 |
T |
|
| Q |
249 |
ttaaaatcttataacgagaaatgaaattttggagaaatatcaatttttaaacatcnnnnnnnttgatagaacattgacaaaattcgataatgctcttgaa |
348 |
Q |
| |
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| ||||||| | || || |||||||||||| |||||| | ||| ||| ||||||| |||| | | | ||||| ||||| |||||| | ||||| |
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| T |
11544087 |
tgaaaatctcaaaatgataaatgaaattttagagaaaaaacaactttcaaacatcaagaaaattgaaaaacctttgactaaatttgataataatattgaa |
11543988 |
T |
|
| Q |
349 |
gaatttatcattggtggtatt-aaaaaagtaagttagcttccatga |
393 |
Q |
| |
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|| |||||||||||||| ||| | ||||| || ||||||| ||||| |
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| T |
11543987 |
gagtttatcattggtggaattgacaaaagaaaattagcttacatga |
11543942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 179 - 366
Target Start/End: Complemental strand, 14863852 - 14863666
Alignment:
| Q |
179 |
aacaatttgatttgctgacagaagaatccaagttcttgaaacaccaaaacaagagtctgtcaaatcaaaattaaaatcttataacgagaaatgaaatttt |
278 |
Q |
| |
|
|||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||| | |||||| ||| ||| || | ||||||| ||||||| |
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| T |
14863852 |
aacagtttgatttgttgacagaagaatctaagttcttgaaacaccaaaacaagagtttgtcgatccaaaatgaaattctcatgatgagaaataaaatttt |
14863753 |
T |
|
| Q |
279 |
ggagaaatatcaatttttaaacatcnnnnnnnttgatagaacattgacaaaattcgataatgctcttgaagaatttatcattggtggt |
366 |
Q |
| |
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||||||| ||||||||| ||||||| |||| ||| | |||||||||| ||||||||||||||||| | |||||| |||||| |
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| T |
14863752 |
ggagaaagatcaattttcaaacatc-aagaagttgacagacccttgacaaaatgtgataatgctcttgaagagtctatcatgggtggt |
14863666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 393
Target Start/End: Original strand, 24247621 - 24247693
Alignment:
| Q |
322 |
ttgacaaaattcgataatgctcttgaagaatttatcattggtggtatt-aaaaaagtaagttagcttccatga |
393 |
Q |
| |
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|||| |||||| ||||||| ||||||||| |||||||||||| ||||| ||||| |||||||||||||||| |
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| T |
24247621 |
ttgataaaatttgataatgttcttgaagattttatcattggtagtattggcaaaagcaagttagcttccatga |
24247693 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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