View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19567_low_5 (Length: 530)

Name: NF19567_low_5
Description: NF19567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19567_low_5
NF19567_low_5
[»] chr4 (2 HSPs)
chr4 (12-515)||(42536960-42537463)
chr4 (368-468)||(42530893-42530992)
[»] chr1 (1 HSPs)
chr1 (108-174)||(45958115-45958181)


Alignment Details
Target: chr4 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 12 - 515
Target Start/End: Complemental strand, 42537463 - 42536960
Alignment:
Q  12 aagaatatggttggtgtgtaatgcttgatttatgtgcattgagaccaaaagaaagagacactttaggtatgtctatgtttaaacctgattttatggtttg 111  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42537463 aagaaaatggttggtgtgtaatgcttgatttatgtgcattgagaccaaaagaaagagacactttaggtatgtctatgtttaaacctgattttatggtttg 42537364  T
Q  112 ttcattttacaaaatatttggtgaaaatccatctgggtttggttgtttatttgtcaaaaaatcaagtatttcttctcttaaagatttaggaaatgctaca 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42537363 ttcattttacaaaatatttggtgaaaatccatctgggtttggttgtttatttgtcaaaaaatcaagtatttcttctcttaaagatttaggaaatgctaca 42537264  T
Q  212 agcataggaattataagtcttgttcctacatttgcacaatgtcacacttctagctctcgtcgaaatgatagtgcaccaccaaactctggattattaggac 311  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| || |||||||| |||||| ||| ||||||||||     
T  42537263 agcattggaattataagtcttgttcctacatttgcacaatgtcacacttctagctctcatcaaaacgagagtgcaccgccaaacgctgaattattaggat 42537164  T
Q  312 tcgcttctcctgagaaccagagggttaagactaaagaagagcaaaatgaggtatcatcatcatcagaaattgtggagctacaaggcatggacatgaatga 411  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  42537163 tcgcttctcctgagaaccagagggataagactaaagaagagcaaaatgaggtatcatcattatcagaaattgtggagttacaaggcatggacatgaatga 42537064  T
Q  412 tgaaagattggaaattgagtgtagaggattagaccacgcagactcagtgggactaatagtgattagtacaagaacaaggtatttgattaattggcttgtt 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42537063 tgaaagattggaaattgagtgtagaggattagaccacgcagactcagtgggactaatagtgattagtacaagaacaaggtatttgattaattggcttgtt 42536964  T
Q  512 aatg 515  Q
    ||||    
T  42536963 aatg 42536960  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 368 - 468
Target Start/End: Complemental strand, 42530992 - 42530893
Alignment:
Q  368 tcatcatcagaaattgtggagctacaaggcatggacatgaatgatgaaagattggaaattgagtgtagaggattagaccacgcagactcagtgggactaa 467  Q
    ||||| || ||||| |||||||||||||||||| |||||||  ||||||||| ||||||||  ||||||||||||||||| ||| ||| |||||||||||    
T  42530992 tcatcgtcggaaatcgtggagctacaaggcatgaacatgaagaatgaaagat-ggaaattgtatgtagaggattagaccatgcaaacttagtgggactaa 42530894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 108 - 174
Target Start/End: Original strand, 45958115 - 45958181
Alignment:
Q  108 tttgttcattttacaaaatatttggtgaaaatccatctgggtttggttgtttatttgtcaaaaaatc 174  Q
    |||||||||| |||||| | ||||| |||||||||||||| ||||||||  | |||||||| |||||    
T  45958115 tttgttcattctacaaagtttttggagaaaatccatctggttttggttgcctttttgtcaagaaatc 45958181  T

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